Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0590
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-3|CAB03401.1|  410|Caenorhabditis elegans Hypothetical pr...    46   3e-05
AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical ...    28   6.6  

>Z81128-3|CAB03401.1|  410|Caenorhabditis elegans Hypothetical
           protein T23D8.3 protein.
          Length = 410

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +1

Query: 97  KSKKNLKKMSSPWXVEPKERWDCETILSTYSNLYNHPKLIEEPK 228
           K K+  + +        K +WDCE+  + Y+N+YNHP LI+EP+
Sbjct: 266 KDKEEYEIVEVDEGTNKKMKWDCESFATQYTNIYNHPTLIKEPR 309


>AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.5 protein.
          Length = 994

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 10  AGRPGSSKPRRGSTSSTRKPK*GGYNVFRKSKKNLKKMSSPWXVE 144
           +G PGS  P RGS  S R+ + G     R  +++L +  S W ++
Sbjct: 547 SGSPGSVDPIRGSRRSVRQDRCGA----RSDQQDLPRDGSLWRIQ 587


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,403,106
Number of Sequences: 27780
Number of extensions: 168217
Number of successful extensions: 593
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)