Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0590
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49990.1 68416.m05466 expressed protein 33 0.12
At3g52540.1 68416.m05780 ovate family protein 52% similar to ova... 29 2.7
At5g58370.2 68418.m07309 expressed protein 28 4.7
At5g58370.1 68418.m07308 expressed protein 28 4.7
At2g40130.2 68415.m04936 heat shock protein-related contains sim... 28 4.7
At1g08760.1 68414.m00975 expressed protein similar to At1g21030,... 28 4.7
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 27 8.2
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 27 8.2
>At3g49990.1 68416.m05466 expressed protein
Length = 502
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 142 EPKERWDCETILSTYSNLYNHP 207
+ E+ DCETI+STYSNL N P
Sbjct: 359 DESEKHDCETIVSTYSNLDNLP 380
>At3g52540.1 68416.m05780 ovate family protein 52% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 282
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 109 NLKKMSSPWXVEPKERWDCETILSTYSNLYNHPKLIEEPKKPKR 240
N SS W + + +TI S S + N PK + EP+ P R
Sbjct: 22 NSSSSSSSWPWPSSHQQNLKTISSKASFIVNKPKDVYEPEPPPR 65
>At5g58370.2 68418.m07309 expressed protein
Length = 465
Score = 28.3 bits (60), Expect = 4.7
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Frame = +1
Query: 13 GRPGSSKPRRGSTSSTRKPK*-GGYNVFRKSKKNLKKMSSPWXVEPKERWDCETILSTYS 189
G S K + +S K K G +V RKS + ++ S V P+E D +
Sbjct: 83 GSTSSFKTANDAATSVFKTKSRSGVDVTRKSYRKRDELDSNVDVSPRESSDVPS-FKARK 141
Query: 190 NLYNHPKLI--------EEPKKPKRIVIDP----KTGIPKDVLGADGGRL 303
+++ +++ ++P+K KRI +DP I DVL DG R+
Sbjct: 142 QVFSEKRVVGDGSDVQEDKPRKRKRIRLDPYDTSNKRIVDDVLLDDGLRV 191
>At5g58370.1 68418.m07308 expressed protein
Length = 446
Score = 28.3 bits (60), Expect = 4.7
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Frame = +1
Query: 13 GRPGSSKPRRGSTSSTRKPK*-GGYNVFRKSKKNLKKMSSPWXVEPKERWDCETILSTYS 189
G S K + +S K K G +V RKS + ++ S V P+E D +
Sbjct: 83 GSTSSFKTANDAATSVFKTKSRSGVDVTRKSYRKRDELDSNVDVSPRESSDVPS-FKARK 141
Query: 190 NLYNHPKLI--------EEPKKPKRIVIDP----KTGIPKDVLGADGGRL 303
+++ +++ ++P+K KRI +DP I DVL DG R+
Sbjct: 142 QVFSEKRVVGDGSDVQEDKPRKRKRIRLDPYDTSNKRIVDDVLLDDGLRV 191
>At2g40130.2 68415.m04936 heat shock protein-related contains
similarity to 101 kDa heat shock protein; HSP101
[Triticum aestivum] gi|11561808|gb|AAC83689
Length = 910
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 142 EPKERWDCETILSTY-SNLYNHPKLIEEPKKP 234
E +E++ CE + + NL NH +LIE P KP
Sbjct: 778 EIEEKYHCEENSNVWLMNLKNHKRLIEVPFKP 809
>At1g08760.1 68414.m00975 expressed protein similar to At1g21030,
At5g44890, At2g29240, At1g08740; similar to EST
gb|N96641
Length = 748
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/71 (29%), Positives = 29/71 (40%)
Frame = +1
Query: 34 PRRGSTSSTRKPK*GGYNVFRKSKKNLKKMSSPWXVEPKERWDCETILSTYSNLYNHPKL 213
PRR ++S K NVF +S K K+ S VEP D + S + K
Sbjct: 331 PRRSTSSEKLPSKQERANVFARSSKEHNKIQSTKKVEPTAVLDTKDKTSRPKSTSVEKKS 390
Query: 214 IEEPKKPKRIV 246
+ E P +V
Sbjct: 391 VAENGLPGNLV 401
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 10 AGRPGSSKPRRGSTSSTRKPK*GG 81
+GRP SS PR G R P+ GG
Sbjct: 417 SGRPKSSNPRNGGEGYQRVPQNGG 440
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 10 AGRPGSSKPRRGSTSSTRKPK*GG 81
+GRP SS PR G R P+ GG
Sbjct: 416 SGRPKSSNPRNGGEGYQRVPQNGG 439
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,799,022
Number of Sequences: 28952
Number of extensions: 156438
Number of successful extensions: 498
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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