Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0588
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    29   0.63 
SPCC1672.04c |||mitochondrial copper ion transport protein|Schiz...    27   1.9  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    27   3.4  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   7.8  

>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 448 RLSTVKLSTP-NINAAAVNYPDPNNASTAS 362
           RL++ +L+ P N N   V Y  P+NASTAS
Sbjct: 584 RLASKQLNVPVNNNFRTVGYASPSNASTAS 613


>SPCC1672.04c |||mitochondrial copper ion transport
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 101

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 556 GDNNSTDLIVSGGGTGSNFANAGPNPRKRGG 464
           GD N+T   +S    G+N +N+  +  K GG
Sbjct: 70  GDENATSTSLSSSNDGNNNSNSSSSDNKTGG 100


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 556 GDNNSTDLIVSGGGTGSNFANAGPNPRKRGG 464
           G +++T L V G G  ++ A  GPN + R G
Sbjct: 318 GIDDNTVLRVMGAGNDASTAKGGPNAKSRPG 348


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 418 SALTVLRWKVSNSNLTLLFFW 480
           S  ++ RW V+NSN+T+  F+
Sbjct: 148 SFTSIYRWNVTNSNVTIEHFY 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,483
Number of Sequences: 5004
Number of extensions: 41806
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)