Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0588
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0020 + 18430006-18430191,18431675-18431746,18432380-18432538     29   2.6  
03_06_0397 - 33624883-33625484,33625569-33625632,33625663-336257...    29   4.6  
08_01_0306 - 2570411-2570419,2570809-2570886,2571464-2571671,257...    28   8.0  
04_04_0843 - 28619064-28619280,28619730-28619825,28620349-286207...    28   8.0  
01_02_0045 - 10576475-10577198,10578347-10578504                       28   8.0  
01_01_0256 - 2083973-2084816,2084922-2086093                           28   8.0  

>11_05_0020 + 18430006-18430191,18431675-18431746,18432380-18432538
          Length = 138

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
 Frame = -3

Query: 487 PNPR----KRGGLSWSWRLSTVKLSTPNINAAAVNYP 389
           P+PR    +RG   W+WR  T+   T N       YP
Sbjct: 29  PDPRGEASERGAAQWTWRAGTIGSWTVNTRTLTAEYP 65


>03_06_0397 -
           33624883-33625484,33625569-33625632,33625663-33625744,
           33626081-33626649
          Length = 438

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 297 KXHMVGSGVLPRQCLWKXFSSWEAVDALFGS--G*LTAAALIF 419
           + H++G+G+ P Q +WK   SW A  ++     G L   A++F
Sbjct: 190 RSHLIGNGIFPPQSIWK--DSWIAARSVMKGIVGSLPWTAVVF 230


>08_01_0306 -
           2570411-2570419,2570809-2570886,2571464-2571671,
           2573400-2573521,2573815-2573883,2573963-2574052,
           2574113-2574230,2574956-2575086,2575195-2575464,
           2577323-2577433,2577604-2578152
          Length = 584

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = -3

Query: 583 FNKTKYYRIGDNNSTDLIVSGGGTGSNFANAGPNPRKRGGLSWSWRLSTVKLSTPNINAA 404
           F+ T + R+ D+        GGG     A AG  P+KR G+S S     V   T      
Sbjct: 51  FDTTDHPRVSDS------AGGGGRTDRKAPAGAAPKKRKGVSASTSAGPVPRKTTAAGRK 104

Query: 403 AVNYPDPN 380
             N P P+
Sbjct: 105 RRNPPCPS 112


>04_04_0843 -
           28619064-28619280,28619730-28619825,28620349-28620720,
           28620849-28621161,28621183-28621393,28621478-28621681,
           28622328-28622726
          Length = 603

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 388 DPNNASTASQELNXF-QRHCRGRTPEPTMCXFP 293
           DP  +S  S+E+N + +RHC  R   P +C  P
Sbjct: 85  DPRRSSRLSREMNYYRERHCPARGEAP-VCLVP 116


>01_02_0045 - 10576475-10577198,10578347-10578504
          Length = 293

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 550 NNSTDLIVSGGGTGSNFANAGPNPRKRGGLSWSW 449
           +NS     +G  +GS  A  G  PR++GG + SW
Sbjct: 163 SNSAGEWAAGSKSGSAAAARGAGPREQGGSTASW 196


>01_01_0256 - 2083973-2084816,2084922-2086093
          Length = 671

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 529 VSGGGTGSNFANAGPN-PRKRGGLSW 455
           V GGG G+ +  +  + PR RGG SW
Sbjct: 11  VGGGGAGAGYPESTESSPRSRGGDSW 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,757,899
Number of Sequences: 37544
Number of extensions: 331277
Number of successful extensions: 791
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)