BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0588 (687 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_05_0020 + 18430006-18430191,18431675-18431746,18432380-18432538 29 2.6 03_06_0397 - 33624883-33625484,33625569-33625632,33625663-336257... 29 4.6 08_01_0306 - 2570411-2570419,2570809-2570886,2571464-2571671,257... 28 8.0 04_04_0843 - 28619064-28619280,28619730-28619825,28620349-286207... 28 8.0 01_02_0045 - 10576475-10577198,10578347-10578504 28 8.0 01_01_0256 - 2083973-2084816,2084922-2086093 28 8.0 >11_05_0020 + 18430006-18430191,18431675-18431746,18432380-18432538 Length = 138 Score = 29.5 bits (63), Expect = 2.6 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%) Frame = -3 Query: 487 PNPR----KRGGLSWSWRLSTVKLSTPNINAAAVNYP 389 P+PR +RG W+WR T+ T N YP Sbjct: 29 PDPRGEASERGAAQWTWRAGTIGSWTVNTRTLTAEYP 65 >03_06_0397 - 33624883-33625484,33625569-33625632,33625663-33625744, 33626081-33626649 Length = 438 Score = 28.7 bits (61), Expect = 4.6 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +3 Query: 297 KXHMVGSGVLPRQCLWKXFSSWEAVDALFGS--G*LTAAALIF 419 + H++G+G+ P Q +WK SW A ++ G L A++F Sbjct: 190 RSHLIGNGIFPPQSIWK--DSWIAARSVMKGIVGSLPWTAVVF 230 >08_01_0306 - 2570411-2570419,2570809-2570886,2571464-2571671, 2573400-2573521,2573815-2573883,2573963-2574052, 2574113-2574230,2574956-2575086,2575195-2575464, 2577323-2577433,2577604-2578152 Length = 584 Score = 27.9 bits (59), Expect = 8.0 Identities = 21/68 (30%), Positives = 28/68 (41%) Frame = -3 Query: 583 FNKTKYYRIGDNNSTDLIVSGGGTGSNFANAGPNPRKRGGLSWSWRLSTVKLSTPNINAA 404 F+ T + R+ D+ GGG A AG P+KR G+S S V T Sbjct: 51 FDTTDHPRVSDS------AGGGGRTDRKAPAGAAPKKRKGVSASTSAGPVPRKTTAAGRK 104 Query: 403 AVNYPDPN 380 N P P+ Sbjct: 105 RRNPPCPS 112 >04_04_0843 - 28619064-28619280,28619730-28619825,28620349-28620720, 28620849-28621161,28621183-28621393,28621478-28621681, 28622328-28622726 Length = 603 Score = 27.9 bits (59), Expect = 8.0 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = -3 Query: 388 DPNNASTASQELNXF-QRHCRGRTPEPTMCXFP 293 DP +S S+E+N + +RHC R P +C P Sbjct: 85 DPRRSSRLSREMNYYRERHCPARGEAP-VCLVP 116 >01_02_0045 - 10576475-10577198,10578347-10578504 Length = 293 Score = 27.9 bits (59), Expect = 8.0 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -3 Query: 550 NNSTDLIVSGGGTGSNFANAGPNPRKRGGLSWSW 449 +NS +G +GS A G PR++GG + SW Sbjct: 163 SNSAGEWAAGSKSGSAAAARGAGPREQGGSTASW 196 >01_01_0256 - 2083973-2084816,2084922-2086093 Length = 671 Score = 27.9 bits (59), Expect = 8.0 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = -3 Query: 529 VSGGGTGSNFANAGPN-PRKRGGLSW 455 V GGG G+ + + + PR RGG SW Sbjct: 11 VGGGGAGAGYPESTESSPRSRGGDSW 36 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,757,899 Number of Sequences: 37544 Number of extensions: 331277 Number of successful extensions: 791 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 773 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 791 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1744894544 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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