Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0588
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.5  
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)                   29   4.7  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               28   8.1  

>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 316  PASFHGSAFGRXLVLGRPLMRYLGPDN*PPPH*YSALTVLRWKVSNSNLTLLFFW 480
            P ++HG    R  +LGR  +  + P   PPP    AL +   ++ N+ +T    W
Sbjct: 3536 PLTWHGHISMRIELLGRRPVGPVRPPRPPPPSRLPALGMRSRRIRNNQITASSVW 3590


>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
          Length = 1051

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 586 RFNKTKYYRIGDNNSTDLIVSGGGTGSNF 500
           R    KY  IGD++   + V+GG  G NF
Sbjct: 912 RVTNEKYVGIGDHHGGQIAVAGGDRGHNF 940


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 325 RTPEPTMCXFPRNPHEATTLRIIDPRRLEV 236
           +TP P     P++PH   TLR+  P  +++
Sbjct: 243 KTPYPIEIVDPKSPHPMGTLRLYSPHPMQI 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,167,200
Number of Sequences: 59808
Number of extensions: 323026
Number of successful extensions: 589
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)