Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0588
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   1.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.3  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 306 MVGSGVLPRQCLWKXFSSW 362
           MVG  VLP    W+ F  W
Sbjct: 113 MVGLAVLPFSATWEVFKVW 131


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 153 YIY*LYGHSIHGDFRVRKKRPIDPLILPTS--NLLGSIILNVVAS*GFLGKXHM 308
           YIY LY   + G   +RKKR     I P     + G+ I N   S  F  K HM
Sbjct: 125 YIYHLYMGLLSGGIILRKKREFMQKIWPFKEYQMNGNNITNFKNSNIFQLKQHM 178


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 210 RPIDPLILPTSNL 248
           +P+DPL+L  SN+
Sbjct: 652 KPVDPLLLVLSNI 664


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 210 RPIDPLILPTSNL 248
           +P+DPL+L  SN+
Sbjct: 652 KPVDPLLLVLSNI 664


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,436
Number of Sequences: 438
Number of extensions: 3079
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)