Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0588
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)           31   0.54 
At1g44970.1 68414.m05155 peroxidase, putative similar to peroxid...    30   1.3  
At4g34000.2 68417.m04825 ABA-responsive element-binding protein ...    29   3.8  
At4g34000.1 68417.m04824 ABA-responsive element-binding protein ...    29   3.8  
At5g42560.1 68418.m05180 abscisic acid-responsive HVA22 family p...    28   6.7  

>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
          Length = 638

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = -3

Query: 463 LSWSWRLSTVKLSTPNINAAAVNYPDPNNASTASQELNXFQRHCRGRTPEPTMCXFPRNP 284
           L  S+R +   L   + N  A+N  D   A+ A+ +L         + P P+    PR+ 
Sbjct: 105 LGQSFRSNRQLLEEQHQNIPAMNATDSATATAAAMQLFLMNPPPPQQPPSPSSTTSPRSH 164

Query: 283 HEATTLRIIDP 251
           H ++TL ++ P
Sbjct: 165 HNSSTLHMLLP 175


>At1g44970.1 68414.m05155 peroxidase, putative similar to peroxidase
           GI:993004 from [Mercurialis annua]
          Length = 346

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = -3

Query: 469 GGLSWSWRLSTVKLSTPNINAAAVNYPDPNNASTASQELNXFQR 338
           GG SW   L      T ++N A  N P PN  ST    L  FQR
Sbjct: 156 GGPSWELPLGRRDSRTASLNGANTNIPAPN--STIQNLLTMFQR 197


>At4g34000.2 68417.m04825 ABA-responsive element-binding protein /
           abscisic acid responsive elements-binding factor (ABRE)
           / ABA-responsive elements-binding factor (ABF3)
           identical to abscisic acid responsive elements-binding
           factor (ABF3) GI:6739280 from [Arabidopsis thaliana];
           identical to cDNA abscisic acid responsive
           elements-binding factor (ABRE) mRNA, complete cds
           GI:6739279
          Length = 454

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 628 LASSILFA*SLHQVRFNKTKYYRIGDNNSTDLIVSGGG 515
           L  +I  A   H +  N T Y  I + NS + +++GGG
Sbjct: 61  LLKNIWTAEESHSMMGNNTSYTNISNGNSGNTVINGGG 98


>At4g34000.1 68417.m04824 ABA-responsive element-binding protein /
           abscisic acid responsive elements-binding factor (ABRE)
           / ABA-responsive elements-binding factor (ABF3)
           identical to abscisic acid responsive elements-binding
           factor (ABF3) GI:6739280 from [Arabidopsis thaliana];
           identical to cDNA abscisic acid responsive
           elements-binding factor (ABRE) mRNA, complete cds
           GI:6739279
          Length = 449

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 628 LASSILFA*SLHQVRFNKTKYYRIGDNNSTDLIVSGGG 515
           L  +I  A   H +  N T Y  I + NS + +++GGG
Sbjct: 61  LLKNIWTAEESHSMMGNNTSYTNISNGNSGNTVINGGG 98


>At5g42560.1 68418.m05180 abscisic acid-responsive HVA22 family
           protein weak similarity to SP|Q00765 Polyposis locus
           protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
           profile PF03134: TB2/DP1, HVA22 family
          Length = 296

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = -3

Query: 481 PRKRGGLSWSWRLSTVKLSTPNINAAAVNYPDPNNASTASQELNXFQRHCRGRT-PEPTM 305
           P+KRGG +        K   P      V+    +++S++  E N   R   G + P PT+
Sbjct: 153 PQKRGGRANQAPAKPKKAPVPQSEPEEVSLSSSSSSSSSENEGNEPTRKVSGPSRPRPTV 212

Query: 304 CXFP-RNPHEATTLRI 260
              P  +P  A T +I
Sbjct: 213 TSVPAADPKNAGTTQI 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,299,128
Number of Sequences: 28952
Number of extensions: 242410
Number of successful extensions: 529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)