Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0585
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   2.0  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   2.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   4.6  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   6.0  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.0  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   8.0  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 305 YGNLPILVGISSFPQSIPDLDHDLMSFSV 219
           YG  P+ VG++ +  SI  L    M F++
Sbjct: 60  YGGPPVEVGVTMYVLSISSLSEVKMDFTL 88


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 349 QQL*NGSNSTANSCFNWKTLAPMGLSTVTNSPLFAPRTESTPT 477
           QQL    N +A+      T +P  +     SP  APR+ +TPT
Sbjct: 184 QQLQQQQNKSASRT----TTSPTKVKASKASPAAAPRSVATPT 222


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 26  TSVAERKSDPRFENVRLRIQKEEASVRVQRVLRRQPER 139
           T + E +    F N R R++K+  S     V    PER
Sbjct: 257 TKLTEARIQVWFSNRRARLRKQITSAATPLVRSYAPER 294


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 202 FHPRRLQIFSIANSKSFLSMV 140
           FH ++  IFSI N+ S L +V
Sbjct: 296 FHVKKSTIFSILNTVSTLLIV 316


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 75  SEFRRKKLLYVFNVFFDV 128
           S FR  KLL ++N+   V
Sbjct: 34  SNFRSSKLLILYNIILQV 51


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 75  SEFRRKKLLYVFNVFFDV 128
           S FR  KLL ++N+   V
Sbjct: 52  SNFRSSKLLILYNIILQV 69


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,997
Number of Sequences: 336
Number of extensions: 3241
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)