Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0585
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    32   0.076
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.54 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    29   0.94 
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    29   0.94 
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    29   0.94 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.94 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    28   1.2  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    28   1.6  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    27   2.2  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    27   2.9  
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    27   3.8  
SPAC56F8.04c |coq2|ppt1|para-hydroxybenzoate--polyprenyltransfer...    26   5.0  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   6.6  
SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo...    25   8.7  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    25   8.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   8.7  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 32.3 bits (70), Expect = 0.076
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
 Frame = -3

Query: 490 AILHSLGSIPYEEQTVVNSSQSIVPSALASSS*NMNWQ*SCCHFRAADGX*A*SFHIDTH 311
           ++L S  SIP    +  +SS + + S ++SSS    +  S     ++      S  +   
Sbjct: 537 SVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFS-SVSSILSSSTSSPSSTSLSIS 595

Query: 310 SSTETCPSLLESARFLNPSQILIMIS*VSVFFWSPGFHPRRLQIFS---IANSKSFLSMV 140
           SS+ +  S   SA   +PS I   IS  S    SP      L I S   I+ S S LS  
Sbjct: 596 SSSTS--STFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSS 653

Query: 139 PLWLTSKNTLNTYRSFFLLNSETDIFES 56
              +   ++L+TY S  + +S T +  S
Sbjct: 654 ISTIPISSSLSTYSSSVIPSSSTLVSSS 681


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +1

Query: 403 TLAPMGLSTVTNSPLFAPRTESTPTNARWLSXRWPRASTTCPGXSSRNYGRSTS 564
           ++AP  + T T+S  F   + STP+++   S   P +S++    SS++   S+S
Sbjct: 131 SIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSS 184


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 15/61 (24%), Positives = 24/61 (39%)
 Frame = +3

Query: 183  CSLRGWKPGDQKNTETHEIMIKIWDGLRKRADSNKDGQVSVEEWVSMWNDYAXNPSAALK 362
            C+L GW    +   + H IM++ W  L     SN   +  +E     W  +    S   +
Sbjct: 903  CNLSGWSQSSRYGWKGHHIMVQYWSEL--TGSSNYMQESDLEYPYKRWFPHVFMDSDYTQ 960

Query: 363  W 365
            W
Sbjct: 961  W 961


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 24  VLPSLN-ENQTRDSKMSVSEFRRKKLLYVFNVFFDVNQSGTIERKDFE 164
           ++P+ N +NQ    ++ VS F+ +KLL   +    +N  G+ E  DF+
Sbjct: 59  IMPTANRDNQGVREELLVSSFKERKLLNTNSANLRLNSIGSYEMIDFK 106


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 534 EFQELWKEYFSTXDPNAAGNFIF 602
           EFQ+++K++F   DP+A   ++F
Sbjct: 47  EFQKIYKQFFPFGDPSAFAEYVF 69



 Score = 28.7 bits (61), Expect = 0.94
 Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
 Frame = +3

Query: 93  KLLYVFNVFFDVNQSGTIERKDFELAIEKICSLRGWKPGDQKNTETHEIMI-KIWDGLRK 269
           KL++ F ++ D++ +G I   +    ++ I  + G      ++ +T E  + KI++ +  
Sbjct: 100 KLIWAFQLY-DLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMM-- 156

Query: 270 RADSNKDGQVSVEEW 314
             D NKDGQ+++EE+
Sbjct: 157 --DKNKDGQLTLEEF 169


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 373 STANSCFNWKTLAPMGLSTVTNSPLFAPRTESTP 474
           ST+ SC    ++ P G ST   +P   P + STP
Sbjct: 388 STSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTP 421



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +1

Query: 373 STANSCFNWKTLAPMGLSTVTNSPLFAP-RTESTPTNARWLSXRWPRASTTCPGXSSRN- 546
           ST+ SC    ++ P G ST   +P   P  T ST T         P AST+  G SS   
Sbjct: 334 STSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPP-------PPASTSSTGTSSSPL 386

Query: 547 YGRSTSLLXILMRPGTSSS 603
              STS       P T +S
Sbjct: 387 LSTSTSCTTSTSIPPTGNS 405



 Score = 25.8 bits (54), Expect = 6.6
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +1

Query: 373 STANSCFNWKTLAPMGLSTVTNSPLFAP-RTESTPTNARWLSXRWPRASTTCPGXSSRNY 549
           +T+ SC    ++ P G ST   +P   P  T ST T         P AST+  G SS   
Sbjct: 280 TTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPP-------PPASTSSTGTSSSPL 332

Query: 550 -GRSTSLLXILMRPGTSSS 603
              STS       P T +S
Sbjct: 333 PSTSTSCTTSTSIPPTGNS 351


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
 Frame = +3

Query: 33  SLNENQTRDSKMSVSEFR-RKKLLYVFNVF-----FDVNQSGTIERKD-FELAIEKICSL 191
           SL+EN+T+DS  ++      + LL VF +F     F+ NQ+  ++  D F L I  + SL
Sbjct: 527 SLSENKTKDSINAIDVHNSEQNLLAVFVIFRNLSHFEANQNVLVQNPDFFPLLIRVVKSL 586


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/54 (33%), Positives = 21/54 (38%)
 Frame = +1

Query: 319 LCGMTTLXTHQQL*NGSNSTANSCFNWKTLAPMGLSTVTNSPLFAPRTESTPTN 480
           LCGM    T +   N  NS   S FNW  L   G   + + P     T  T  N
Sbjct: 416 LCGMDRFLTQKLSWNNINSFPTSTFNWVALD--GSQVICHMPPANTYTADTNVN 467


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/29 (44%), Positives = 23/29 (79%)
 Frame = +1

Query: 400 KTLAPMGLSTVTNSPLFAPRTESTPTNAR 486
           +T A + LSTVT++P+F+  T+S+P ++R
Sbjct: 364 ETNASVALSTVTSTPVFS--TDSSPLSSR 390


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = -3

Query: 490 AILHSLGSIPYEEQTVVNSSQSIVPSALASSS 395
           A + ++GS+   E +V ++ Q ++P+++ASSS
Sbjct: 71  AQMQAMGSVSPPELSVHSAQQPLIPTSIASSS 102


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +3

Query: 39  NENQTRDSKMSVSEFRRKKLLYVFNVFF--DVNQSGTIERKDFELAIEKICS 188
           +++Q  +  +S S F  +++  +   F   D NQSG+I+R +F L+I  + S
Sbjct: 4   SQSQIFEDLISNSSFSNEEIERIRKRFIKIDANQSGSIDRNEF-LSIPSVAS 54


>SPAC56F8.04c
           |coq2|ppt1|para-hydroxybenzoate--
           polyprenyltransferaseCoq2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 358

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 385 SCFNWKTLAPMGLSTVT 435
           +C NW  +AP+ LST++
Sbjct: 223 ACMNWSVVAPLYLSTIS 239


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 559 YSFHSSWNSSQDTLCLPL 506
           Y F   WN++  TLC+PL
Sbjct: 141 YKFMRLWNAAFGTLCIPL 158


>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 24  VLPSLNENQTRDSKMSVSEFRRKKL 98
           ++PSLN  +  D K SV+  +RKKL
Sbjct: 50  LVPSLNLEKQGDRKESVASKKRKKL 74


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 461 VRGANSGEFVTVDSPIGASVFQLKHELA 378
           +RG N G +++++  I  S FQ+K+E A
Sbjct: 160 IRGVNLGGWLSMEPFITPSFFQVKNETA 187


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 535  SSQDTLCLPLAILXKAILHSLGSIPYEEQTVVNSSQSIVPSALASSS 395
            +S   L     I   ++L+S  S P    TVVNSS  I  S++ +SS
Sbjct: 1921 TSSSVLNSSTPITSSSVLNS--STPITSSTVVNSSTPITSSSVLNSS 1965



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 535  SSQDTLCLPLAILXKAILHSLGSIPYEEQTVVNSSQSIVPSALASSS 395
            +S   L     I   ++L+S  S P    TVVNSS  I  S++ +SS
Sbjct: 2113 TSSSVLNSSTPITSSSVLNS--STPITSSTVVNSSTPITSSSVLNSS 2157



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 535  SSQDTLCLPLAILXKAILHSLGSIPYEEQTVVNSSQSIVPSALASSS 395
            +S   L     I   ++L+S  S P    TVVNSS  I  S++ +SS
Sbjct: 2425 TSSSVLNSSTPITSSSVLNS--STPITSSTVVNSSTPITSSSVLNSS 2469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,117
Number of Sequences: 5004
Number of extensions: 58089
Number of successful extensions: 238
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)