Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0584
         (503 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4; Bilateria|...   101   7e-21
UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204; Euka...   100   4e-20
UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3; Eukary...    94   2e-18
UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2; Ost...    77   2e-13
UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56; Euk...    69   8e-11
UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1; ...    68   1e-10
UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole ge...    44   0.001
UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1; Enceph...    44   0.002
UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1; ...    41   0.014
UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3; Eukary...    35   1.2  
UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102...    34   1.6  
UniRef50_A4ANL3 Cluster: Putative lipoprotein; n=1; Flavobacteri...    34   2.1  
UniRef50_UPI0000F1F127 Cluster: PREDICTED: hypothetical protein;...    32   6.4  

>UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4;
           Bilateria|Rep: Ribosomal protein L27a - Ascaris suum
           (Pig roundworm) (Ascaris lumbricoides)
          Length = 133

 Score =  101 bits (243), Expect = 7e-21
 Identities = 51/97 (52%), Positives = 59/97 (60%)
 Frame = +2

Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
           YFGK+GMRNFH RKN  +CP +NLDKLW+LVSE+TR  YA   D K PVI++VKA     
Sbjct: 38  YFGKVGMRNFHVRKNGLYCPTVNLDKLWSLVSEKTRTTYAEKKD-KAPVIDVVKAGYFKV 96

Query: 347 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
                 PKQPVIV               VGGAC+L A
Sbjct: 97  LGKGLLPKQPVIVKAKFFSRTAEQKIKGVGGACILVA 133



 Score = 36.3 bits (80), Expect = 0.39
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = +1

Query: 61  HGRIGKAPXSIQXGRGNAGGEHHH 132
           HGRIGK       GRGNAGG+HHH
Sbjct: 5   HGRIGKHRKH-PGGRGNAGGQHHH 27


>UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204;
           Eukaryota|Rep: 60S ribosomal protein L27a - Homo sapiens
           (Human)
          Length = 148

 Score = 99.5 bits (237), Expect = 4e-20
 Identities = 45/97 (46%), Positives = 60/97 (61%)
 Frame = +2

Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
           YFGK+GM+++H ++N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++     
Sbjct: 52  YFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKV 111

Query: 347 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
                 PKQPVIV               VGGACVL A
Sbjct: 112 LGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148



 Score = 35.1 bits (77), Expect = 0.91
 Identities = 22/59 (37%), Positives = 28/59 (47%)
 Frame = +1

Query: 61  HGRIGKAPXSIQXGRGNAGGEHHHXNQHGTSTIPGILWQTWYEKFPL*KEQEFLSSFEL 237
           HGRIGK       GRGNAGG HHH   +     PG   +   + + L + Q F  +  L
Sbjct: 19  HGRIGKHRKH-PGGRGNAGGLHHH-RINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNL 75


>UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3;
           Eukaryota|Rep: 60S ribosomal protein L27a - Tetrahymena
           thermophila
          Length = 149

 Score = 93.9 bits (223), Expect = 2e-18
 Identities = 47/97 (48%), Positives = 57/97 (58%)
 Frame = +2

Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
           Y+GKLGMR FH +KN   CPV+N+DKLW+LVS+ TR KYA     KVPVI++ KA     
Sbjct: 54  YYGKLGMRTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAE-DKKKVPVIDVTKAGFFKV 112

Query: 347 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
                 P QPV+V               VGGACVL+A
Sbjct: 113 LGKGRLPNQPVVVKAKYFSKTAERRIVAVGGACVLTA 149



 Score = 33.5 bits (73), Expect = 2.8
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 61  HGRIGK-APXSIQXGRGNAGGEHHH 132
           HGR+GK      + GRG AGG HHH
Sbjct: 19  HGRVGKHRKGGCRGGRGKAGGMHHH 43


>UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2;
           Ostreococcus|Rep: 60s ribosomal protein L15/L27 -
           Ostreococcus tauri
          Length = 198

 Score = 77.4 bits (182), Expect = 2e-13
 Identities = 38/97 (39%), Positives = 52/97 (53%)
 Frame = +2

Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
           YFGK+GMR+FH  KN+  CP +N+DKLWTLV  + R + A     + PVI++        
Sbjct: 103 YFGKVGMRHFHKLKNQTVCPTINIDKLWTLVGTEKREECAK-NTSQAPVIDLTDHGIFKL 161

Query: 347 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
                 P QPV+V              +VGGAC+L+A
Sbjct: 162 LGKGQLPNQPVVVKCRYISKLAEKKIKEVGGACILTA 198



 Score = 35.9 bits (79), Expect = 0.52
 Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 1/131 (0%)
 Frame = +1

Query: 61  HGRIGKAPXSIQXGRGNAGGEHHHXNQHGTSTIPGILWQTWYEKFPL*KEQEFLSSFELR 240
           HGRIGK       GRG AGG+HHH         PG   +     F   K Q    +  + 
Sbjct: 70  HGRIGKHRKH-PAGRGMAGGQHHHRIMM-DKYHPGYFGKVGMRHFHKLKNQTVCPTINID 127

Query: 241 *ALDISL*TDEAEVCICSRWQGPRHQYCQSWILQVARQRQTPQTTCHSKSKVLLKISREE 420
             L   + T++ E C  +  Q P        I ++  + Q P      K + + K++ ++
Sbjct: 128 -KLWTLVGTEKREECAKNTSQAPVIDLTDHGIFKLLGKGQLPNQPVVVKCRYISKLAEKK 186

Query: 421 -NQGCGWCLCT 450
             +  G C+ T
Sbjct: 187 IKEVGGACILT 197


>UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56;
           Eukaryota|Rep: 60S ribosomal protein L27a-2 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 146

 Score = 68.5 bits (160), Expect = 8e-11
 Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
 Frame = +2

Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
           YFGK+GMR FH  +NK FCP++NLDKLW+LV E  + K  S+ D  VP+I++ +      
Sbjct: 52  YFGKVGMRYFHKLRNKFFCPIVNLDKLWSLVPEDVKAK--SSKD-NVPLIDVTQHGFFKV 108

Query: 347 XXXXXXPK-QPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
                 P+ +P +V              + GGA VL+A
Sbjct: 109 LGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146



 Score = 34.7 bits (76), Expect = 1.2
 Identities = 16/24 (66%), Positives = 16/24 (66%)
 Frame = +1

Query: 61  HGRIGKAPXSIQXGRGNAGGEHHH 132
           HGRIGK       GRGNAGG HHH
Sbjct: 19  HGRIGKHRKH-PGGRGNAGGMHHH 41


>UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 187

 Score = 67.7 bits (158), Expect = 1e-10
 Identities = 38/97 (39%), Positives = 49/97 (50%)
 Frame = +2

Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
           YFGK+GMR+FH  +N +F PV+NLDKLWTLV  + R K  +A   +VPVI+ + A     
Sbjct: 92  YFGKVGMRHFHLTRNSSFRPVVNLDKLWTLVPAEQR-KGLTADSTEVPVIDTLAAGYGKV 150

Query: 347 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
                 P  P IV              + GG   L A
Sbjct: 151 LGKGRLPALPCIVKARWVSSLAEKKIKEAGGVVKLVA 187


>UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole
           genome shotgun sequence; n=3; Vitis vinifera|Rep:
           Chromosome chr12 scaffold_159, whole genome shotgun
           sequence - Vitis vinifera (Grape)
          Length = 151

 Score = 44.4 bits (100), Expect = 0.001
 Identities = 16/30 (53%), Positives = 25/30 (83%)
 Frame = +2

Query: 170 FGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 259
           FGK+GMR+FH  + K  CP++++DKLW++V
Sbjct: 35  FGKVGMRHFHKLRIKLHCPIVHIDKLWSMV 64


>UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1;
           Encephalitozoon cuniculi|Rep: 60S ribosomal protein L27a
           - Encephalitozoon cuniculi
          Length = 147

 Score = 44.0 bits (99), Expect = 0.002
 Identities = 22/96 (22%), Positives = 46/96 (47%)
 Frame = +2

Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
           Y GK GMR +H ++N ++   ++  +LW ++ ++ R  +   P+ KVPVI++ +      
Sbjct: 52  YHGKRGMRVYHRKENSDYARPISSARLWGMIPKEQRYDFLDNPE-KVPVIDVREFGYHVV 110

Query: 347 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLS 454
                  ++P++V               VGG  +++
Sbjct: 111 VGGKLSLERPIVVKARYFTPSAKEEITKVGGKWIIT 146


>UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1;
           n=1; Arabidopsis thaliana|Rep: Putative 60S ribosomal
           protein L27a-1 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 104

 Score = 41.1 bits (92), Expect = 0.014
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +2

Query: 179 LGMRNFHFRKNKNFCPVLNLDKLWTLV 259
           +GMR FH  +NK +C ++NLDKLW++V
Sbjct: 37  VGMRYFHKLRNKFYCQIVNLDKLWSMV 63


>UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3;
           Eukaryota|Rep: 60S ribosomal protein L27A - Guillardia
           theta (Cryptomonas phi)
          Length = 144

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +1

Query: 61  HGRIGKAPXSIQXGRGNAGGEHHH 132
           HGR+GK       GRGN+GG+HHH
Sbjct: 19  HGRVGKHRKH-PGGRGNSGGQHHH 41


>UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102C;
           n=2; Saccharomycetaceae|Rep: Putative uncharacterized
           protein YGL102C - Saccharomyces cerevisiae (Baker's
           yeast)
          Length = 142

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -2

Query: 343 LVVSSFDNIDDGDLAIWSRC-ILQPRLFRD*CPKLI*VQNWTEILVLSKVEISHTKFAKV 167
           L V+   ++++    + SR  +L   +F D CP+ + VQ+W   + L  VE+SHT   ++
Sbjct: 42  LTVTGCQSVNNWSSFLRSRFQVLVSLVFWDQCPQFVQVQDWLPEMSLLLVEVSHTNLTEI 101


>UniRef50_A4ANL3 Cluster: Putative lipoprotein; n=1;
           Flavobacteriales bacterium HTCC2170|Rep: Putative
           lipoprotein - Flavobacteriales bacterium HTCC2170
          Length = 535

 Score = 33.9 bits (74), Expect = 2.1
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -3

Query: 447 TQAPPTSLIFFSADFEKNFAFTMTGCLGSLPL 352
           T A   SL FFS D + N A T  GCLG+ P+
Sbjct: 306 TDAEGNSLYFFSLDTKDNSACTSAGCLGAWPV 337


>UniRef50_UPI0000F1F127 Cluster: PREDICTED: hypothetical protein;
           n=7; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 656

 Score = 32.3 bits (70), Expect = 6.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 215 NFCPVLNLDKLWTLVSEQTRLKYASAPDGKV 307
           NFCP L  D  WT++S+ +   Y S+PD  V
Sbjct: 116 NFCPWLEED--WTMLSDDSTTPYESSPDNSV 144


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 405,332,318
Number of Sequences: 1657284
Number of extensions: 7155653
Number of successful extensions: 17365
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17343
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30110042232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)