Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0584
         (503 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   3.6  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   6.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.3  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.3  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 310 RHQYCQSWILQVARQRQTPQTTCHSKS 390
           RH   ++W+    R + TPQ+   S++
Sbjct: 237 RHLERKAWVASFGRPKMTPQSLLPSQT 263


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -1

Query: 272 SSVQRLMSKAYLSSKLDRN 216
           S +++ +++AY + K+DRN
Sbjct: 88  SQIKKNVTRAYCNKKIDRN 106


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -1

Query: 272 SSVQRLMSKAYLSSKLDRN 216
           S +++ +++AY + K+DRN
Sbjct: 88  SQIKKNVTRAYCNKKIDRN 106


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 229 NWTEILVLSKVEISHTKF 176
           +WTEI   + V  S TKF
Sbjct: 60  SWTEINAFANVSPSKTKF 77


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 250 DISL*TDEAEVCICSRWQGPRHQYCQ 327
           D+S    E + CI  + Q  R QYC+
Sbjct: 117 DLSYACREEKNCIIDKRQRNRCQYCR 142


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -1

Query: 119 PPALPRPXWMLXGAXPIRPCXVTNMTY 39
           PP LP     L GA   R C V    Y
Sbjct: 128 PPTLPVTSIHLRGAIGQRSCQVVIQCY 154


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 381 MTGCLGSLPLPSNL*YPALTILMTGTL 301
           MTG    +P  S + Y    ILM GT+
Sbjct: 271 MTGTKTVMPSQSAIKYRKQVILMLGTV 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,044
Number of Sequences: 336
Number of extensions: 1929
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)