Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0584
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    70   2e-13
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    68   9e-13
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   8.5  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.5  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    25   8.5  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 36/97 (37%), Positives = 46/97 (47%)
 Frame = +2

Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
           YFGK+GMR FH  KN  + P +NLD+LWTLV  +TR KY        PVIN++++     
Sbjct: 52  YFGKVGMRRFHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKV 111

Query: 347 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
                 P  PVI+                GG   L A
Sbjct: 112 LGKGRLPDTPVIIQTRYVSRRAEEKIKQAGGVVELIA 148


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 67.7 bits (158), Expect = 9e-13
 Identities = 35/97 (36%), Positives = 46/97 (47%)
 Frame = +2

Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
           YFGK+GMR FH  KN  + P +NLD+LWTL+  + R KY        PVIN++++     
Sbjct: 52  YFGKVGMRRFHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKV 111

Query: 347 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
                 P+ PVIV                GG   L A
Sbjct: 112 LGKGRLPETPVIVQTRYVSRRAEEKIKQAGGVVELIA 148


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 233 NLDKLWTLVSEQTRLKYASAPDGKVP 310
           NL K W  +S     K++  P+G +P
Sbjct: 323 NLKKQWASISPNITYKHSYNPNGTIP 348


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 128 ITXINMXQVPSLXYFGKLGMRNFHFRKNKNFCP-VLNLDKLWTL 256
           I  +N     SL  + +  ++N HF KNK+  P +L +D L  L
Sbjct: 279 IRVLNANTDQSLILYTQSDVKNLHFGKNKHTKPHLLVMDALSNL 322


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 325 DNIDDGDLAIWSRCILQPRL 266
           DN+D+ DLA +S+ I +P L
Sbjct: 2   DNLDEDDLAFFSKPIKKPPL 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,657,946
Number of Sequences: 5004
Number of extensions: 29934
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)