Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0584
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1250 - 25183375-25183815 62 3e-10
03_04_0027 + 16593133-16593573 59 2e-09
02_01_0563 + 4134954-4135388 57 9e-09
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553... 28 4.9
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483... 28 4.9
08_01_0359 + 3152483-3152857,3154493-3154855,3155133-3155211,315... 28 4.9
08_02_1146 + 24678142-24678258,24678550-24678587,24678997-246790... 27 6.5
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 27 8.6
>07_03_1250 - 25183375-25183815
Length = 146
Score = 61.7 bits (143), Expect = 3e-10
Identities = 30/97 (30%), Positives = 51/97 (52%)
Frame = +2
Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
YFGK+GMR FH +NK + P +N+++LW++V + + A A GK P++++ +
Sbjct: 52 YFGKVGMRYFHRLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKV 109
Query: 347 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
P++P++V GGA VL+A
Sbjct: 110 LGKGLLPEKPIVVKAKLISKVAEKKIKAAGGAVVLTA 146
Score = 34.7 bits (76), Expect = 0.043
Identities = 16/24 (66%), Positives = 16/24 (66%)
Frame = +1
Query: 61 HGRIGKAPXSIQXGRGNAGGEHHH 132
HGRIGK GRGNAGG HHH
Sbjct: 19 HGRIGKHRKH-PGGRGNAGGMHHH 41
>03_04_0027 + 16593133-16593573
Length = 146
Score = 58.8 bits (136), Expect = 2e-09
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Frame = +2
Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXX 343
YFGK+GMR FH N+ CP +N+++LW++V K A A GK PVI++ +
Sbjct: 52 YFGKVGMRYFHKLSNRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKV 108
Query: 344 XXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
P++P++V GGA +L+A
Sbjct: 109 LGKGMLPPQRPIVVKAKLISKVAEKKIKAAGGAVLLTA 146
Score = 34.7 bits (76), Expect = 0.043
Identities = 16/24 (66%), Positives = 16/24 (66%)
Frame = +1
Query: 61 HGRIGKAPXSIQXGRGNAGGEHHH 132
HGRIGK GRGNAGG HHH
Sbjct: 19 HGRIGKHRKH-PGGRGNAGGMHHH 41
>02_01_0563 + 4134954-4135388
Length = 144
Score = 56.8 bits (131), Expect = 9e-09
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Frame = +2
Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXX 343
YFGK+GMR FH N+ CP +N+++LW++V + A A GK PVI++ +
Sbjct: 52 YFGKVGMRYFHRLSNRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKV 106
Query: 344 XXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
P++P++V GGA +L+A
Sbjct: 107 LGKGMLPPERPIVVKAKLISKVAEKKIKAAGGAVLLTA 144
Score = 34.7 bits (76), Expect = 0.043
Identities = 16/24 (66%), Positives = 16/24 (66%)
Frame = +1
Query: 61 HGRIGKAPXSIQXGRGNAGGEHHH 132
HGRIGK GRGNAGG HHH
Sbjct: 19 HGRIGKHRKH-PGGRGNAGGMHHH 41
>11_06_0756 +
26952196-26952264,26952760-26953206,26954009-26955358,
26955400-26955408
Length = 624
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/60 (28%), Positives = 23/60 (38%)
Frame = -2
Query: 235 VQNWTEILVLSKVEISHTKFAKVXQGWYLXHVDXCDGAHHQHYHDLPGCXTVLXRYDHVP 56
V+N+ L + + F+ V G Y CD HH+H L V Y H P
Sbjct: 318 VKNFVVHLHVPAASSTTLTFSSVECGGYYDAATVCDHCHHRHQQQL---LAVGYSYSHAP 374
>11_03_0135 -
10547460-10547558,10547926-10548086,10548183-10548306,
10548566-10548729,10549803-10549883,10549973-10550097,
10550200-10550430,10550566-10550588,10551055-10551539,
10551678-10552075,10552903-10552988,10553120-10553397,
10553494-10553714,10553927-10554018,10554148-10554213,
10555855-10556022
Length = 933
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 271 EAEVCICSRWQ-GPRHQYCQSWILQVARQRQTPQTTCHSK 387
E ++ +CSR G H YC ++Q + + TCHS+
Sbjct: 288 EEKLAVCSRCNDGAEHIYCMRVMMQEVPKAKWLCETCHSE 327
>08_01_0359 +
3152483-3152857,3154493-3154855,3155133-3155211,
3155473-3155879,3156342-3156497,3156728-3156895,
3156991-3157131,3157739-3157966,3158063-3158176,
3158293-3158448
Length = 728
Score = 27.9 bits (59), Expect = 4.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 106 GNAGGEHHHXNQHG 147
G GG HHH N HG
Sbjct: 6 GGGGGVHHHLNHHG 19
>08_02_1146 +
24678142-24678258,24678550-24678587,24678997-24679012,
24679874-24680002,24680073-24680229,24680337-24680530,
24680668-24680916,24681196-24681309,24681949-24681990,
24682402-24682572,24682932-24683104,24683378-24683624,
24684046-24684130,24684401-24684510,24684714-24684977,
24685885-24685950,24686431-24686525,24686780-24686858
Length = 781
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +1
Query: 304 GPRHQYCQSWILQVARQRQTPQTTCHS 384
GP H WI + +Q P+ HS
Sbjct: 258 GPMHNAADKWITEFGKQNNNPEEWAHS 284
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +1
Query: 313 HQYCQSWILQVARQRQTPQTTCHSKSKVLLKISREENQGCGWC 441
H Y S ILQ QR + + V + I N+G WC
Sbjct: 437 HTYLDSAILQHQLQRLSEHNLLKATPSVFVVIQAIVNEGAVWC 479
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,330,961
Number of Sequences: 37544
Number of extensions: 212985
Number of successful extensions: 698
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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