Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0584
         (503 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)                    96   2e-20
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)                    29   2.9  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       28   5.0  
SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)                 28   5.0  
SB_30585| Best HMM Match : Myotub-related (HMM E-Value=2.9e-17)        27   8.8  
SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)          27   8.8  

>SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)
          Length = 173

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 48/97 (49%), Positives = 57/97 (58%)
 Frame = +2

Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
           YFGK+GMR+FH  +N    P +NLDK+W+LVSEQTR  Y +  DG VPVI++VKA     
Sbjct: 77  YFGKVGMRHFHLTRNAYHKPSINLDKVWSLVSEQTRQNYKNKKDGPVPVIDVVKAGYYKV 136

Query: 347 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
                 PKQPVIV               VGGACVL A
Sbjct: 137 LGKGLLPKQPVIVKAKFFSRRAEDKIKAVGGACVLMA 173


>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
          Length = 1860

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -2

Query: 277  QPRLFRD*CPKLI*VQNWT----EILVLSKVEISHTKFAKVXQGWYLXHVDXCDG 125
            QP+LF++ CP++  + N+T    + L L + ++ +    K+  GWY      CDG
Sbjct: 925  QPQLFKEYCPQVQAIHNYTPQQPDELALHEGDVINV-LRKLPDGWYHGE-RLCDG 977


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 130 HXNQHGTSTIPGILWQTW 183
           H NQ  TST+ G LW  W
Sbjct: 44  HGNQVATSTMSGSLWDAW 61


>SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)
          Length = 983

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 130 HXNQHGTSTIPGILWQTW 183
           H NQ  TST+ G LW  W
Sbjct: 920 HGNQVATSTMSGSLWDAW 937


>SB_30585| Best HMM Match : Myotub-related (HMM E-Value=2.9e-17)
          Length = 488

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 194 NFSYQVCQSXPGMVLVP 144
           N++Y VC+S P +V+VP
Sbjct: 174 NYTYTVCRSYPAVVVVP 190


>SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)
          Length = 1814

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 109 NAGGEHHHXNQHGTSTIPGILWQTW 183
           N  GE+HH     T    G+ WQ W
Sbjct: 645 NLNGEYHHRYSSVTLGYVGMYWQKW 669


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,720,832
Number of Sequences: 59808
Number of extensions: 244138
Number of successful extensions: 590
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)