Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0584
(503 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a pr... 100 6e-21
BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for IM... 100 6e-21
BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a ... 100 6e-21
AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A ... 100 6e-21
BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a ... 93 4e-19
AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a ... 79 7e-15
AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a ... 46 1e-04
AK126225-1|BAC86496.1| 139|Homo sapiens protein ( Homo sapiens ... 29 9.2
>U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 99.5 bits (237), Expect = 6e-21
Identities = 45/97 (46%), Positives = 60/97 (61%)
Frame = +2
Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
YFGK+GM+++H ++N++FCP +NLDKLWTLVSEQTR+ A G P+I++V++
Sbjct: 52 YFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKV 111
Query: 347 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
PKQPVIV VGGACVL A
Sbjct: 112 LGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
Score = 35.1 bits (77), Expect = 0.14
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = +1
Query: 61 HGRIGKAPXSIQXGRGNAGGEHHHXNQHGTSTIPGILWQTWYEKFPL*KEQEFLSSFEL 237
HGRIGK GRGNAGG HHH + PG + + + L + Q F + L
Sbjct: 19 HGRIGKHRKH-PGGRGNAGGLHHH-RINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNL 75
>BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for
IMAGE:3543815) protein.
Length = 147
Score = 99.5 bits (237), Expect = 6e-21
Identities = 45/97 (46%), Positives = 60/97 (61%)
Frame = +2
Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
YFGK+GM+++H ++N++FCP +NLDKLWTLVSEQTR+ A G P+I++V++
Sbjct: 51 YFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKV 110
Query: 347 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
PKQPVIV VGGACVL A
Sbjct: 111 LGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 147
Score = 35.1 bits (77), Expect = 0.14
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = +1
Query: 61 HGRIGKAPXSIQXGRGNAGGEHHHXNQHGTSTIPGILWQTWYEKFPL*KEQEFLSSFEL 237
HGRIGK GRGNAGG HHH + PG + + + L + Q F + L
Sbjct: 18 HGRIGKHRKH-PGGRGNAGGLHHH-RINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNL 74
>BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 99.5 bits (237), Expect = 6e-21
Identities = 45/97 (46%), Positives = 60/97 (61%)
Frame = +2
Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
YFGK+GM+++H ++N++FCP +NLDKLWTLVSEQTR+ A G P+I++V++
Sbjct: 52 YFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKV 111
Query: 347 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
PKQPVIV VGGACVL A
Sbjct: 112 LGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
Score = 35.1 bits (77), Expect = 0.14
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = +1
Query: 61 HGRIGKAPXSIQXGRGNAGGEHHHXNQHGTSTIPGILWQTWYEKFPL*KEQEFLSSFEL 237
HGRIGK GRGNAGG HHH + PG + + + L + Q F + L
Sbjct: 19 HGRIGKHRKH-PGGRGNAGGLHHH-RINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNL 75
>AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A
protein.
Length = 148
Score = 99.5 bits (237), Expect = 6e-21
Identities = 45/97 (46%), Positives = 60/97 (61%)
Frame = +2
Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
YFGK+GM+++H ++N++FCP +NLDKLWTLVSEQTR+ A G P+I++V++
Sbjct: 52 YFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKV 111
Query: 347 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
PKQPVIV VGGACVL A
Sbjct: 112 LGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
Score = 35.1 bits (77), Expect = 0.14
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = +1
Query: 61 HGRIGKAPXSIQXGRGNAGGEHHHXNQHGTSTIPGILWQTWYEKFPL*KEQEFLSSFEL 237
HGRIGK GRGNAGG HHH + PG + + + L + Q F + L
Sbjct: 19 HGRIGKHRKH-PGGRGNAGGLHHH-RINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNL 75
>BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 93.5 bits (222), Expect = 4e-19
Identities = 43/97 (44%), Positives = 59/97 (60%)
Frame = +2
Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
YFGK+GM++++ ++N++FCP +NLDKLWTLVSEQTR+ A G P+I++V++
Sbjct: 52 YFGKVGMKHYNLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKV 111
Query: 347 XXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
KQPVIV VGGACVL A
Sbjct: 112 LGKGKLAKQPVIVKAKLFSRRAEEKIKSVGGACVLVA 148
Score = 35.1 bits (77), Expect = 0.14
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = +1
Query: 61 HGRIGKAPXSIQXGRGNAGGEHHHXNQHGTSTIPGILWQTWYEKFPL*KEQEFLSSFEL 237
HGRIGK GRGNAGG HHH + PG + + + L + Q F + L
Sbjct: 19 HGRIGKHRKH-PGGRGNAGGLHHH-RINFDKYHPGYFGKVGMKHYNLKRNQSFCPTVNL 75
>AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a
protein.
Length = 106
Score = 79.4 bits (187), Expect = 7e-15
Identities = 30/55 (54%), Positives = 45/55 (81%)
Frame = +2
Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 331
YFGK+GM+++H ++N++FCP +NLDKLWTLVSEQTR+ A G P+I++V++
Sbjct: 52 YFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106
Score = 35.1 bits (77), Expect = 0.14
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = +1
Query: 61 HGRIGKAPXSIQXGRGNAGGEHHHXNQHGTSTIPGILWQTWYEKFPL*KEQEFLSSFEL 237
HGRIGK GRGNAGG HHH + PG + + + L + Q F + L
Sbjct: 19 HGRIGKHRKH-PGGRGNAGGLHHH-RINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNL 75
>AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a
protein.
Length = 34
Score = 45.6 bits (103), Expect = 1e-04
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2
Query: 230 LNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 331
+NLDKLWTLVSEQTR+ A G P+I++V++
Sbjct: 1 VNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 34
>AK126225-1|BAC86496.1| 139|Homo sapiens protein ( Homo sapiens
cDNA FLJ44237 fis, clone THYMU3007845. ).
Length = 139
Score = 29.1 bits (62), Expect = 9.2
Identities = 12/43 (27%), Positives = 15/43 (34%)
Frame = +1
Query: 328 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGCGWCLCTIC 456
+W L Q PQ + L R + C WC C C
Sbjct: 71 AWFLSPVHHSQIPQLAACPLQSLRLSKPRSPGRCCAWCGCLNC 113
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,187,467
Number of Sequences: 237096
Number of extensions: 1137026
Number of successful extensions: 2099
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2096
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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