Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0584
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   1.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   3.2  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   3.2  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   3.2  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   3.2  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   3.2  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   3.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   3.2  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   3.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   5.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   5.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.6  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 265 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQTPQT 372
           +DEAE    S+  G    + QS I +VAR+ +T  T
Sbjct: 272 SDEAEPSSTSKKSGIVRSHQQSCINRVARETKTAGT 307


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 310 RHQYCQSWILQVARQRQTPQTTCHSKS 390
           RH   ++W+    R + TPQ+   S++
Sbjct: 241 RHLERKAWVASFGRPKMTPQSLLPSQT 267


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 265 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 360
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 265 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 360
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 265 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 360
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 265 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 360
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 265 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 360
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 265 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 360
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 265 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 360
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 265 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 360
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 257 VSEQTRLKYASAPDGKVPVI 316
           V EQT      A D KVP+I
Sbjct: 230 VKEQTLQSIEMAKDAKVPII 249



 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 121 HHQHYHDLP 95
           H+QHYH  P
Sbjct: 7   HYQHYHITP 15


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 250 DISL*TDEAEVCICSRWQGPRHQYCQ 327
           D+S    E + CI  + Q  R QYC+
Sbjct: 141 DLSYACREEKSCIIDKRQRNRCQYCR 166


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 250 DISL*TDEAEVCICSRWQGPRHQYCQ 327
           D+S    E + CI  + Q  R QYC+
Sbjct: 141 DLSYACREEKSCIIDKRQRNRCQYCR 166


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 118 GEHHHXNQHGTSTI 159
           G HHH   HG S I
Sbjct: 413 GPHHHTMGHGHSHI 426


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 282 YFSLVCSETNVQSLSKFK 229
           YFS+VC      SL  FK
Sbjct: 11  YFSIVCQAKAHYSLRDFK 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,176
Number of Sequences: 438
Number of extensions: 2168
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)