Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0584
         (503 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...    69   2e-12
At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...    68   3e-12
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    41   4e-04
At5g53590.1 68418.m06658 auxin-responsive family protein similar...    29   1.3  

>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
 Frame = +2

Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
           YFGK+GMR FH  +NK FCP++NLDKLW+LV E  + K  S+ D  VP+I++ +      
Sbjct: 52  YFGKVGMRYFHKLRNKFFCPIVNLDKLWSLVPEDVKAK--SSKD-NVPLIDVTQHGFFKV 108

Query: 347 XXXXXXPK-QPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
                 P+ +P +V              + GGA VL+A
Sbjct: 109 LGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146



 Score = 34.7 bits (76), Expect = 0.036
 Identities = 16/24 (66%), Positives = 16/24 (66%)
 Frame = +1

Query: 61  HGRIGKAPXSIQXGRGNAGGEHHH 132
           HGRIGK       GRGNAGG HHH
Sbjct: 19  HGRIGKHRKH-PGGRGNAGGMHHH 41


>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
 Frame = +2

Query: 167 YFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXX 346
           YFGK+GMR FH  +NK FCP++NLDKLW+LV E  + K  S  D  VP+I++ +      
Sbjct: 52  YFGKVGMRYFHKLRNKFFCPIVNLDKLWSLVPEDVKAK--STKD-NVPLIDVTQHGFFKV 108

Query: 347 XXXXXXPK-QPVIVXXXXXXXXXXXXXXDVGGACVLSA 457
                 P+ +P +V              + GGA VL+A
Sbjct: 109 LGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146



 Score = 34.7 bits (76), Expect = 0.036
 Identities = 16/24 (66%), Positives = 16/24 (66%)
 Frame = +1

Query: 61  HGRIGKAPXSIQXGRGNAGGEHHH 132
           HGRIGK       GRGNAGG HHH
Sbjct: 19  HGRIGKHRKH-PGGRGNAGGMHHH 41


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +2

Query: 179 LGMRNFHFRKNKNFCPVLNLDKLWTLV 259
           +GMR FH  +NK +C ++NLDKLW++V
Sbjct: 37  VGMRYFHKLRNKFYCQIVNLDKLWSMV 63


>At5g53590.1 68418.m06658 auxin-responsive family protein similar to
           indole-3-acetic acid induced protein ARG7 (SP:P32295)
           [Vigna radiata]
          Length = 142

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 190 SHTKFAKVXQGWYLXHVDXCDGAHHQHYHDLP-GCXTVLXRYD 65
           +H K       +++ H+      HH H+HD+P GC  ++  ++
Sbjct: 16  NHIKHMVFKFHFHVPHLHILPHHHHHHHHDVPKGCVAIMVGHE 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,865,554
Number of Sequences: 28952
Number of extensions: 165038
Number of successful extensions: 449
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)