Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0582
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   1.8  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   4.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.3  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 564 SCDEKLRSICVXACISHRXPTSTIVLQLEVFIFXTFTIYNAPSSSITL 421
           S +EKL+   +   ++HR PT T +    +     FT+  A ++ IT+
Sbjct: 612 SLEEKLQIFALQ--LTHRAPTFTALGLFPINGSFAFTVVGAATTYITI 657


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 44  NFLFYIVNFEKINIRNEFCKNSKVNELNSF*SWVPLQW 157
           NFLF +  F     +  +C +S  N  N    +  LQW
Sbjct: 236 NFLFVLSTFSICITQFYYCYDSGFNSDNLTDVYFTLQW 273


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 491 CFSLKFSSSKRSPYI 447
           CFSLK  + K  P++
Sbjct: 525 CFSLKLKNKKLPPFL 539


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,019
Number of Sequences: 336
Number of extensions: 2611
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)