Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0582
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 148 7e-37
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 113 2e-26
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 101 7e-23
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 83 4e-17
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 82 9e-17
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 64 2e-11
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 54 3e-08
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 50 3e-07
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 0.64
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 27 3.4
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 4.5
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 26 6.0
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 25 7.9
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 148 bits (359), Expect = 7e-37
Identities = 73/124 (58%), Positives = 82/124 (66%)
Frame = +1
Query: 208 KGPKVTHKVSFDMXIGDDNIGTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVI 387
+GPKVT V FD+ GD+ +G + IGLFGKTVPKT NF LA +G GY+GS HRVI
Sbjct: 21 RGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVI 80
Query: 388 XNFMIQXXXXXXXXXXXXRIIYGERXEDENFKLKHYGAGWXSMANAGXDTNGSQFFITTV 567
NFMIQ + IYG R DENFKL H G SMANAG D+NGSQFFITTV
Sbjct: 81 PNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTV 140
Query: 568 KTPW 579
KTPW
Sbjct: 141 KTPW 144
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 113 bits (273), Expect = 2e-26
Identities = 58/114 (50%), Positives = 65/114 (57%)
Frame = +1
Query: 238 FDMXIGDDNIGTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXNFMIQXXXX 417
FD+ +G IV LF VPKT NF L +G GY GS HRVI FM+Q
Sbjct: 6 FDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGDF 65
Query: 418 XXXXXXXXRIIYGERXEDENFKLKHYGAGWXSMANAGXDTNGSQFFITTVKTPW 579
+ IYGE+ DENF LKH G SMANAG +TNGSQFFITTV TPW
Sbjct: 66 TRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPW 119
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 101 bits (243), Expect = 7e-23
Identities = 56/106 (52%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Frame = +1
Query: 271 TIVIGLFGKTVPKTTXNFFQLAQKPEGEG----YKGSKXHRVIXNFMIQXXXXXXXXXXX 438
TI LF VPKT NF L E +G YKGS+ HRVI NFM+Q
Sbjct: 18 TIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTG 77
Query: 439 XRIIYGERXEDENFKLKHYGAGWXSMANAGXDTNGSQFFITTVKTP 576
IYGE+ EDENF+LKH SMANAG +TNGSQFFITTV TP
Sbjct: 78 GESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTP 123
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 83.0 bits (196), Expect = 4e-17
Identities = 55/121 (45%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Frame = +1
Query: 232 VSFDMXIGDDNIGTIVIGLFGKTVPKTTXNFFQLA--------QKPEGEGYKGSKXHRVI 387
V D+ I +G I I LF VPKT NF Q QKP G YK S HR+I
Sbjct: 7 VFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIG--YKNSTFHRII 64
Query: 388 XNFMIQXXXXXXXXXXXXRIIYGERX-EDENFKLKHYGAGWXSMANAGXDTNGSQFFITT 564
FMIQ I+ R DENF LKH G SMANAG D+NG QFFITT
Sbjct: 65 QGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITT 124
Query: 565 V 567
V
Sbjct: 125 V 125
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 81.8 bits (193), Expect = 9e-17
Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Frame = +1
Query: 262 NIGTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXNFMIQXXXXXXXXXXXX 441
++G I+I L+ + PKT NF+ LA+ EG Y G HRVI +F+IQ
Sbjct: 9 SLGKILIELYTEHAPKTCQNFYTLAK--EGY-YDGVIFHRVIPDFVIQGGDPTGTGRGGT 65
Query: 442 RIIYGERXEDE-NFKLKHYGAGWXSMANAGXDTNGSQFFITTVKTPW 579
I YG++ +DE + L H GAG SMANAG +TN SQFFIT TPW
Sbjct: 66 SI-YGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPW 111
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 64.1 bits (149), Expect = 2e-11
Identities = 41/104 (39%), Positives = 51/104 (49%)
Frame = +1
Query: 268 GTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXNFMIQXXXXXXXXXXXXRI 447
G I I L+ + PK NF A E Y + HR+I NFMIQ I
Sbjct: 464 GDISIKLYPEEAPKAVQNFTTHA---ENGYYDNTIFHRIIKNFMIQGGDPLGDGTGGESI 520
Query: 448 IYGERXEDENFKLKHYGAGWXSMANAGXDTNGSQFFITTVKTPW 579
+ ++ + LKH SMAN+G +TNGSQFFITT TPW
Sbjct: 521 WKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPW 564
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 53.6 bits (123), Expect = 3e-08
Identities = 40/100 (40%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Frame = +1
Query: 262 NIGTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXNFMIQXXXXXXXXXXXX 441
N G I I L P NF QLA++ Y+ + HR I FMIQ
Sbjct: 283 NHGEINIELHTDYAPHAVYNFVQLAKQGY---YRNTIFHRNIARFMIQGGDPSGTGRGG- 338
Query: 442 RIIYGERXEDENFK-LKHYGAGWXSMANAGXDTNGSQFFI 558
+ I+G+ +DE LKH G SMAN G +TNGSQFFI
Sbjct: 339 QSIWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFI 378
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 50.0 bits (114), Expect = 3e-07
Identities = 40/104 (38%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = +1
Query: 268 GTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXNFMIQXXXXXXXXXXXXRI 447
G I I L+ K VPK NF QL EG Y G+ HRV+ F+IQ I
Sbjct: 22 GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGGDPTGTGMGGESI 78
Query: 448 IYGERXEDENF-KLKHYGAGWXSMANAGXDTNGSQFFITTVKTP 576
YGE E +L+ G MA + N SQFFIT TP
Sbjct: 79 -YGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTP 121
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.1 bits (62), Expect = 0.64
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 256 DDNIGTIVIGLFGKTVPKTTXNFFQLAQ 339
+ +G +VI LF K PKT NF +L +
Sbjct: 6 ETTVGDLVIDLFVKEAPKTCENFLKLCK 33
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 128 SLVRLPCYFYKIRFECLFFQN 66
+LV P YFY R+ L FQN
Sbjct: 54 NLVNTPTYFYIQRYTALLFQN 74
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 139 MGTLTMALGILLFIASAKSDEIPKGPKVTHKVSFDMXIGDDNIGT 273
+G LTM +LL I+S S PK+ + V +++ + DD I +
Sbjct: 996 IGFLTMTEELLLQISSKLSSV---APKILNAVLYNLVVSDDQISS 1037
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -2
Query: 567 NSCDEKLRSICVXACISHRXPTSTIVLQLEVFIFXTFTIYNAPSSS 430
NS LRS + + P +T +L + F + +N PS S
Sbjct: 153 NSAGLSLRSASALDVLKNSGPATTSLLSSTTYPFDSLNAFNEPSHS 198
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -2
Query: 444 APSSSITLGKITXLDHEIXNYSVXLAPFVPLPLRFLS*LKEVXSCLRYSLS 292
+PSS + L K+ LDH + + S P P +++ K+ S L+ + S
Sbjct: 186 SPSSLVPLLKLPALDHAVSSSSSSDLPSDPNSASYIASSKQKASSLKLTSS 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,915
Number of Sequences: 5004
Number of extensions: 42615
Number of successful extensions: 106
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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