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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0582
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...   148   7e-37
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...   113   2e-26
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...   101   7e-23
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...    83   4e-17
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...    82   9e-17
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    64   2e-11
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    54   3e-08
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    50   3e-07
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    29   0.64 
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    27   3.4  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   4.5  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   6.0  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   7.9  

>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score =  148 bits (359), Expect = 7e-37
 Identities = 73/124 (58%), Positives = 82/124 (66%)
 Frame = +1

Query: 208 KGPKVTHKVSFDMXIGDDNIGTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVI 387
           +GPKVT  V FD+  GD+ +G + IGLFGKTVPKT  NF  LA   +G GY+GS  HRVI
Sbjct: 21  RGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVI 80

Query: 388 XNFMIQXXXXXXXXXXXXRIIYGERXEDENFKLKHYGAGWXSMANAGXDTNGSQFFITTV 567
            NFMIQ            + IYG R  DENFKL H   G  SMANAG D+NGSQFFITTV
Sbjct: 81  PNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTV 140

Query: 568 KTPW 579
           KTPW
Sbjct: 141 KTPW 144


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score =  113 bits (273), Expect = 2e-26
 Identities = 58/114 (50%), Positives = 65/114 (57%)
 Frame = +1

Query: 238 FDMXIGDDNIGTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXNFMIQXXXX 417
           FD+      +G IV  LF   VPKT  NF  L    +G GY GS  HRVI  FM+Q    
Sbjct: 6   FDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGDF 65

Query: 418 XXXXXXXXRIIYGERXEDENFKLKHYGAGWXSMANAGXDTNGSQFFITTVKTPW 579
                   + IYGE+  DENF LKH   G  SMANAG +TNGSQFFITTV TPW
Sbjct: 66  TRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPW 119


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score =  101 bits (243), Expect = 7e-23
 Identities = 56/106 (52%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
 Frame = +1

Query: 271 TIVIGLFGKTVPKTTXNFFQLAQKPEGEG----YKGSKXHRVIXNFMIQXXXXXXXXXXX 438
           TI   LF   VPKT  NF  L    E +G    YKGS+ HRVI NFM+Q           
Sbjct: 18  TIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTG 77

Query: 439 XRIIYGERXEDENFKLKHYGAGWXSMANAGXDTNGSQFFITTVKTP 576
              IYGE+ EDENF+LKH      SMANAG +TNGSQFFITTV TP
Sbjct: 78  GESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTP 123


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 83.0 bits (196), Expect = 4e-17
 Identities = 55/121 (45%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
 Frame = +1

Query: 232 VSFDMXIGDDNIGTIVIGLFGKTVPKTTXNFFQLA--------QKPEGEGYKGSKXHRVI 387
           V  D+ I    +G I I LF   VPKT  NF Q          QKP G  YK S  HR+I
Sbjct: 7   VFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIG--YKNSTFHRII 64

Query: 388 XNFMIQXXXXXXXXXXXXRIIYGERX-EDENFKLKHYGAGWXSMANAGXDTNGSQFFITT 564
             FMIQ              I+  R   DENF LKH   G  SMANAG D+NG QFFITT
Sbjct: 65  QGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITT 124

Query: 565 V 567
           V
Sbjct: 125 V 125


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 81.8 bits (193), Expect = 9e-17
 Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
 Frame = +1

Query: 262 NIGTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXNFMIQXXXXXXXXXXXX 441
           ++G I+I L+ +  PKT  NF+ LA+  EG  Y G   HRVI +F+IQ            
Sbjct: 9   SLGKILIELYTEHAPKTCQNFYTLAK--EGY-YDGVIFHRVIPDFVIQGGDPTGTGRGGT 65

Query: 442 RIIYGERXEDE-NFKLKHYGAGWXSMANAGXDTNGSQFFITTVKTPW 579
            I YG++ +DE +  L H GAG  SMANAG +TN SQFFIT   TPW
Sbjct: 66  SI-YGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPW 111


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 41/104 (39%), Positives = 51/104 (49%)
 Frame = +1

Query: 268 GTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXNFMIQXXXXXXXXXXXXRI 447
           G I I L+ +  PK   NF   A   E   Y  +  HR+I NFMIQ             I
Sbjct: 464 GDISIKLYPEEAPKAVQNFTTHA---ENGYYDNTIFHRIIKNFMIQGGDPLGDGTGGESI 520

Query: 448 IYGERXEDENFKLKHYGAGWXSMANAGXDTNGSQFFITTVKTPW 579
              +  ++ +  LKH      SMAN+G +TNGSQFFITT  TPW
Sbjct: 521 WKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPW 564


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 40/100 (40%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
 Frame = +1

Query: 262 NIGTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXNFMIQXXXXXXXXXXXX 441
           N G I I L     P    NF QLA++     Y+ +  HR I  FMIQ            
Sbjct: 283 NHGEINIELHTDYAPHAVYNFVQLAKQGY---YRNTIFHRNIARFMIQGGDPSGTGRGG- 338

Query: 442 RIIYGERXEDENFK-LKHYGAGWXSMANAGXDTNGSQFFI 558
           + I+G+  +DE    LKH   G  SMAN G +TNGSQFFI
Sbjct: 339 QSIWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFI 378


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 40/104 (38%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
 Frame = +1

Query: 268 GTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXNFMIQXXXXXXXXXXXXRI 447
           G I I L+ K VPK   NF QL    EG  Y G+  HRV+  F+IQ             I
Sbjct: 22  GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGGDPTGTGMGGESI 78

Query: 448 IYGERXEDENF-KLKHYGAGWXSMANAGXDTNGSQFFITTVKTP 576
            YGE    E   +L+    G   MA    + N SQFFIT   TP
Sbjct: 79  -YGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTP 121


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 256 DDNIGTIVIGLFGKTVPKTTXNFFQLAQ 339
           +  +G +VI LF K  PKT  NF +L +
Sbjct: 6   ETTVGDLVIDLFVKEAPKTCENFLKLCK 33


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 128 SLVRLPCYFYKIRFECLFFQN 66
           +LV  P YFY  R+  L FQN
Sbjct: 54  NLVNTPTYFYIQRYTALLFQN 74


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 139  MGTLTMALGILLFIASAKSDEIPKGPKVTHKVSFDMXIGDDNIGT 273
            +G LTM   +LL I+S  S      PK+ + V +++ + DD I +
Sbjct: 996  IGFLTMTEELLLQISSKLSSV---APKILNAVLYNLVVSDDQISS 1037


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 567 NSCDEKLRSICVXACISHRXPTSTIVLQLEVFIFXTFTIYNAPSSS 430
           NS    LRS      + +  P +T +L    + F +   +N PS S
Sbjct: 153 NSAGLSLRSASALDVLKNSGPATTSLLSSTTYPFDSLNAFNEPSHS 198


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -2

Query: 444 APSSSITLGKITXLDHEIXNYSVXLAPFVPLPLRFLS*LKEVXSCLRYSLS 292
           +PSS + L K+  LDH + + S    P  P    +++  K+  S L+ + S
Sbjct: 186 SPSSLVPLLKLPALDHAVSSSSSSDLPSDPNSASYIASSKQKASSLKLTSS 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,915
Number of Sequences: 5004
Number of extensions: 42615
Number of successful extensions: 106
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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