BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0582 (700 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 148 7e-37 SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 113 2e-26 SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 101 7e-23 SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 83 4e-17 SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 82 9e-17 SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 64 2e-11 SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 54 3e-08 SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 50 3e-07 SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 0.64 SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 27 3.4 SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 4.5 SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 26 6.0 SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 25 7.9 >SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 201 Score = 148 bits (359), Expect = 7e-37 Identities = 73/124 (58%), Positives = 82/124 (66%) Frame = +1 Query: 208 KGPKVTHKVSFDMXIGDDNIGTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVI 387 +GPKVT V FD+ GD+ +G + IGLFGKTVPKT NF LA +G GY+GS HRVI Sbjct: 21 RGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVI 80 Query: 388 XNFMIQXXXXXXXXXXXXRIIYGERXEDENFKLKHYGAGWXSMANAGXDTNGSQFFITTV 567 NFMIQ + IYG R DENFKL H G SMANAG D+NGSQFFITTV Sbjct: 81 PNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTV 140 Query: 568 KTPW 579 KTPW Sbjct: 141 KTPW 144 >SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual Length = 162 Score = 113 bits (273), Expect = 2e-26 Identities = 58/114 (50%), Positives = 65/114 (57%) Frame = +1 Query: 238 FDMXIGDDNIGTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXNFMIQXXXX 417 FD+ +G IV LF VPKT NF L +G GY GS HRVI FM+Q Sbjct: 6 FDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGDF 65 Query: 418 XXXXXXXXRIIYGERXEDENFKLKHYGAGWXSMANAGXDTNGSQFFITTVKTPW 579 + IYGE+ DENF LKH G SMANAG +TNGSQFFITTV TPW Sbjct: 66 TRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPW 119 >SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual Length = 356 Score = 101 bits (243), Expect = 7e-23 Identities = 56/106 (52%), Positives = 62/106 (58%), Gaps = 4/106 (3%) Frame = +1 Query: 271 TIVIGLFGKTVPKTTXNFFQLAQKPEGEG----YKGSKXHRVIXNFMIQXXXXXXXXXXX 438 TI LF VPKT NF L E +G YKGS+ HRVI NFM+Q Sbjct: 18 TIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTG 77 Query: 439 XRIIYGERXEDENFKLKHYGAGWXSMANAGXDTNGSQFFITTVKTP 576 IYGE+ EDENF+LKH SMANAG +TNGSQFFITTV TP Sbjct: 78 GESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTP 123 >SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 173 Score = 83.0 bits (196), Expect = 4e-17 Identities = 55/121 (45%), Positives = 60/121 (49%), Gaps = 9/121 (7%) Frame = +1 Query: 232 VSFDMXIGDDNIGTIVIGLFGKTVPKTTXNFFQLA--------QKPEGEGYKGSKXHRVI 387 V D+ I +G I I LF VPKT NF Q QKP G YK S HR+I Sbjct: 7 VFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIG--YKNSTFHRII 64 Query: 388 XNFMIQXXXXXXXXXXXXRIIYGERX-EDENFKLKHYGAGWXSMANAGXDTNGSQFFITT 564 FMIQ I+ R DENF LKH G SMANAG D+NG QFFITT Sbjct: 65 QGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITT 124 Query: 565 V 567 V Sbjct: 125 V 125 >SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 155 Score = 81.8 bits (193), Expect = 9e-17 Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 1/107 (0%) Frame = +1 Query: 262 NIGTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXNFMIQXXXXXXXXXXXX 441 ++G I+I L+ + PKT NF+ LA+ EG Y G HRVI +F+IQ Sbjct: 9 SLGKILIELYTEHAPKTCQNFYTLAK--EGY-YDGVIFHRVIPDFVIQGGDPTGTGRGGT 65 Query: 442 RIIYGERXEDE-NFKLKHYGAGWXSMANAGXDTNGSQFFITTVKTPW 579 I YG++ +DE + L H GAG SMANAG +TN SQFFIT TPW Sbjct: 66 SI-YGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPW 111 >SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp9|Schizosaccharomyces pombe|chr 3|||Manual Length = 610 Score = 64.1 bits (149), Expect = 2e-11 Identities = 41/104 (39%), Positives = 51/104 (49%) Frame = +1 Query: 268 GTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXNFMIQXXXXXXXXXXXXRI 447 G I I L+ + PK NF A E Y + HR+I NFMIQ I Sbjct: 464 GDISIKLYPEEAPKAVQNFTTHA---ENGYYDNTIFHRIIKNFMIQGGDPLGDGTGGESI 520 Query: 448 IYGERXEDENFKLKHYGAGWXSMANAGXDTNGSQFFITTVKTPW 579 + ++ + LKH SMAN+G +TNGSQFFITT TPW Sbjct: 521 WKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPW 564 >SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual Length = 516 Score = 53.6 bits (123), Expect = 3e-08 Identities = 40/100 (40%), Positives = 49/100 (49%), Gaps = 1/100 (1%) Frame = +1 Query: 262 NIGTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXNFMIQXXXXXXXXXXXX 441 N G I I L P NF QLA++ Y+ + HR I FMIQ Sbjct: 283 NHGEINIELHTDYAPHAVYNFVQLAKQGY---YRNTIFHRNIARFMIQGGDPSGTGRGG- 338 Query: 442 RIIYGERXEDENFK-LKHYGAGWXSMANAGXDTNGSQFFI 558 + I+G+ +DE LKH G SMAN G +TNGSQFFI Sbjct: 339 QSIWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFI 378 >SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr 2|||Manual Length = 463 Score = 50.0 bits (114), Expect = 3e-07 Identities = 40/104 (38%), Positives = 47/104 (45%), Gaps = 1/104 (0%) Frame = +1 Query: 268 GTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXNFMIQXXXXXXXXXXXXRI 447 G I I L+ K VPK NF QL EG Y G+ HRV+ F+IQ I Sbjct: 22 GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGGDPTGTGMGGESI 78 Query: 448 IYGERXEDENF-KLKHYGAGWXSMANAGXDTNGSQFFITTVKTP 576 YGE E +L+ G MA + N SQFFIT TP Sbjct: 79 -YGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTP 121 >SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating transcription Rct1|Schizosaccharomyces pombe|chr 2|||Manual Length = 432 Score = 29.1 bits (62), Expect = 0.64 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +1 Query: 256 DDNIGTIVIGLFGKTVPKTTXNFFQLAQ 339 + +G +VI LF K PKT NF +L + Sbjct: 6 ETTVGDLVIDLFVKEAPKTCENFLKLCK 33 >SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 773 Score = 26.6 bits (56), Expect = 3.4 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -3 Query: 128 SLVRLPCYFYKIRFECLFFQN 66 +LV P YFY R+ L FQN Sbjct: 54 NLVNTPTYFYIQRYTALLFQN 74 >SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces pombe|chr 2|||Manual Length = 2493 Score = 26.2 bits (55), Expect = 4.5 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = +1 Query: 139 MGTLTMALGILLFIASAKSDEIPKGPKVTHKVSFDMXIGDDNIGT 273 +G LTM +LL I+S S PK+ + V +++ + DD I + Sbjct: 996 IGFLTMTEELLLQISSKLSSV---APKILNAVLYNLVVSDDQISS 1037 >SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces pombe|chr 1|||Manual Length = 576 Score = 25.8 bits (54), Expect = 6.0 Identities = 13/46 (28%), Positives = 20/46 (43%) Frame = -2 Query: 567 NSCDEKLRSICVXACISHRXPTSTIVLQLEVFIFXTFTIYNAPSSS 430 NS LRS + + P +T +L + F + +N PS S Sbjct: 153 NSAGLSLRSASALDVLKNSGPATTSLLSSTTYPFDSLNAFNEPSHS 198 >SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 772 Score = 25.4 bits (53), Expect = 7.9 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = -2 Query: 444 APSSSITLGKITXLDHEIXNYSVXLAPFVPLPLRFLS*LKEVXSCLRYSLS 292 +PSS + L K+ LDH + + S P P +++ K+ S L+ + S Sbjct: 186 SPSSLVPLLKLPALDHAVSSSSSSDLPSDPNSASYIASSKQKASSLKLTSS 236 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,430,915 Number of Sequences: 5004 Number of extensions: 42615 Number of successful extensions: 106 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 100 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 323158234 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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