Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0582
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             141   4e-34
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)             121   6e-28
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)              116   1e-26
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)             110   9e-25
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         51   1e-06
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         51   1e-06
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         44   1e-04
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         42   4e-04
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          41   0.001
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.096
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         29   2.7  
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)                   29   4.8  
SB_4342| Best HMM Match : KA1 (HMM E-Value=0.53)                       28   6.3  
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  141 bits (342), Expect = 4e-34
 Identities = 70/137 (51%), Positives = 83/137 (60%)
 Frame = +1

Query: 169 LLFIASAKSDEIPKGPKVTHKVSFDMXIGDDNIGTIVIGLFGKTVPKTTXNFFQLAQKPE 348
           L+F+A   +D       VT KV  D+ IG    G +++GLFG T PKT  NF  LA K +
Sbjct: 8   LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQ 66

Query: 349 GEGYKGSKXHRVIXNFMIQXXXXXXXXXXXXRIIYGERXEDENFKLKHYGAGWXSMANAG 528
           G GYK S  HRVI NFMIQ              IYG+  +DENF LKHYG GW  MANAG
Sbjct: 67  GFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAG 126

Query: 529 XDTNGSQFFITTVKTPW 579
            +TNGSQF+ITT+KT W
Sbjct: 127 KNTNGSQFYITTIKTSW 143


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =  121 bits (291), Expect = 6e-28
 Identities = 72/155 (46%), Positives = 88/155 (56%), Gaps = 18/155 (11%)
 Frame = +1

Query: 169 LLFIASAKSDEIPKGPKVTHKVSFDMXIGDDNIGTIVIGLFG-------------KTVPK 309
           L F+AS+ +    K P VT KV FD+ IG +  G I IGLF              +++  
Sbjct: 12  LFFLASSAA----KDPIVTKKVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIG 67

Query: 310 TTXNFFQL-----AQKPEGEGYKGSKXHRVIXNFMIQXXXXXXXXXXXXRIIYGERXEDE 474
           T   +F        +  +G GYK S  HRVI +FMIQ            + IYG++  DE
Sbjct: 68  TNFRYFDTYYCCTIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADE 127

Query: 475 NFKLKHYGAGWXSMANAGXDTNGSQFFITTVKTPW 579
           NFKL+HYGAGW SMANAG DTNGSQFFITTVKTPW
Sbjct: 128 NFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPW 162


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score =  116 bits (280), Expect = 1e-26
 Identities = 59/121 (48%), Positives = 72/121 (59%)
 Frame = +1

Query: 217 KVTHKVSFDMXIGDDNIGTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXNF 396
           +V  +V FD+ IG+ + G IV+ L    VP T  NF  L    +G GYKGS  HR+I  F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193

Query: 397 MIQXXXXXXXXXXXXRIIYGERXEDENFKLKHYGAGWXSMANAGXDTNGSQFFITTVKTP 576
           M Q            + IYG + EDENF LKH GAG  SMAN+G +TNGSQFF+TT KT 
Sbjct: 194 MCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTD 253

Query: 577 W 579
           W
Sbjct: 254 W 254


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score =  110 bits (265), Expect = 9e-25
 Identities = 60/122 (49%), Positives = 67/122 (54%)
 Frame = +1

Query: 214 PKVTHKVSFDMXIGDDNIGTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXN 393
           PK T+   FD+ IG    G IV+ L    VPKT  NF  L    +G GYKGS  HRVI  
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58

Query: 394 FMIQXXXXXXXXXXXXRIIYGERXEDENFKLKHYGAGWXSMANAGXDTNGSQFFITTVKT 573
           FM Q            + IYG +  DENF LKH G G  SMANAG  TNGSQFF+ T KT
Sbjct: 59  FMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKT 118

Query: 574 PW 579
            W
Sbjct: 119 SW 120


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = +1

Query: 448 IYGERXEDENFK-LKHYGAGWXSMANAGXDTNGSQFFITTVKTPW 579
           I+G   EDE  + L+H      SMANAG +TNGSQFFIT V TPW
Sbjct: 9   IWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPW 53


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 22/44 (50%), Positives = 26/44 (59%)
 Frame = +1

Query: 448 IYGERXEDENFKLKHYGAGWXSMANAGXDTNGSQFFITTVKTPW 579
           +YG   EDE+F + H   G   MAN G  TNGSQF+IT    PW
Sbjct: 52  VYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPW 95


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/22 (90%), Positives = 20/22 (90%)
 Frame = +1

Query: 514 MANAGXDTNGSQFFITTVKTPW 579
           MANAG DTNGSQFFITTVKT W
Sbjct: 1   MANAGKDTNGSQFFITTVKTSW 22


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +1

Query: 487 KHYGAGWXSMANAGXDTNGSQFFITTVKTP 576
           +H   G  SMAN+G +TNGSQFFITTV TP
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTP 217


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 22/40 (55%), Positives = 24/40 (60%)
 Frame = +1

Query: 448 IYGERXEDENFKLKHYGAGWXSMANAGXDTNGSQFFITTV 567
           IYG    DE F+ KH      SMAN G +TNGSQFFI  V
Sbjct: 32  IYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFIIHV 71


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/23 (73%), Positives = 18/23 (78%)
 Frame = +1

Query: 511 SMANAGXDTNGSQFFITTVKTPW 579
           SMANAG  TNGSQFF+ T KT W
Sbjct: 4   SMANAGPGTNGSQFFLCTAKTSW 26


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 481 KLKHYGAGWXSMANAGXDTNGSQFFITTVKTP 576
           +  H   G  SMAN G ++NGSQFFI   K P
Sbjct: 298 RCNHNARGTVSMANNGPNSNGSQFFICYGKQP 329


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = +1

Query: 262 NIGTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVIXNFMIQ 405
           ++G I I L     P +T NF  LA    G  Y G++ HRVI  FM+Q
Sbjct: 31  SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQ 75


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 262 NIGTIVIGLFGKTVPKTTXNFFQLAQKPEGEGYKGSKXHRVI 387
           ++G I I L+GK  PK   NF QL    EG  Y  +  HR++
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIV 49


>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
          Length = 1189

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 588 PSKPGCLNSCDEKLRSICVXACISHRXPTSTI 493
           P  P C  +CD++    C  AC     PT T+
Sbjct: 876 PPPPACPATCDQQCYPQCAPACCDTATPTITL 907


>SB_4342| Best HMM Match : KA1 (HMM E-Value=0.53)
          Length = 327

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 606 RXPPCXPSKPGCLNSCDEKLRSICVXACISHRXPTSTIVLQLEV 475
           R   C  + P  L  CD  L S+ V  C+S+R P    V  + +
Sbjct: 133 RVQRCVSNCPLYLTVCDMSLNSLRVQRCVSNRNPLYLTVCDMSL 176


>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 224 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 123
           VTL PL +S+    ++N +   A+VRV  I  SL
Sbjct: 38  VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,382,221
Number of Sequences: 59808
Number of extensions: 294265
Number of successful extensions: 444
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)