Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0581
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    27   2.2  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.8  
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    26   5.0  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    26   6.6  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    25   8.7  

>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 280 NSR*QSGILQHPNKRRCQLLRPSKKLETLSIAAQPGR*NGAVSSSRI 420
           N    SG+LQ  +KR      P K ++  S   QP R +GA S++ +
Sbjct: 133 NETSSSGLLQSKDKRSQSPHSPKKPVKNSSSRDQPVRNSGATSTASL 179


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 309 TSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNL 422
           TSK  T SAA+   K  +   + T++PI    +++  L
Sbjct: 202 TSKPATTSAAQPSSKVEENMAKATSQPITTAEKEIPEL 239


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 499 PFYLEVDYLINDLRNTLHYLDEWTKPEHPPKG 594
           P Y  VDY+   LR+ + +  E    EH  +G
Sbjct: 239 PLYFTVDYVSERLRSEVDFTTEANNSEHAREG 270


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 481 DEAKWKPFYLEVDYLINDLRNTLHYLDEWTK 573
           +E K K  Y+  D  I  +  T +Y DEW K
Sbjct: 466 EEFKGKVLYVWFDATIGYISITANYTDEWEK 496


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 342 AVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEAILPR 512
           AVQK +    R    P+   RQ  +NL  + ++N + +   + KDL + ++  I  R
Sbjct: 9   AVQKRKKQKQRSVVDPVTRERQLKRNLADLEKDNFSDIRFEIPKDLLQRRVLPISVR 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,935
Number of Sequences: 5004
Number of extensions: 58679
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)