Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0581
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0550 + 4355857-4356051,4357287-4357355,4357429-4357561,435... 53 2e-07
02_05_0128 - 26059348-26059437,26059553-26059759 48 1e-05
04_04_0660 - 27017692-27017928,27018101-27018250,27018337-270184... 44 1e-04
02_05_0131 + 26098459-26098668,26098788-26098863,26101972-261021... 42 5e-04
12_01_0497 + 3946179-3946322,3947274-3947342,3948733-3948829,395... 31 1.3
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 29 5.2
09_06_0240 + 21797458-21799369,21799636-21799784 28 6.9
04_04_1138 - 31162440-31163488,31163910-31164164,31164386-311645... 28 9.1
>11_01_0550 +
4355857-4356051,4357287-4357355,4357429-4357561,
4358248-4358454,4358601-4358716,4358814-4358918,
4359008-4359180,4359273-4359363,4359682-4359831,
4359928-4360173
Length = 494
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/57 (42%), Positives = 35/57 (61%)
Frame = +3
Query: 336 AEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEAIL 506
A V + R +F G TR EWR QL+ ++RM EE + + +ALH DL + +ME+ L
Sbjct: 7 AAVVGELRGSFRSGRTRAAEWRAAQLRGIVRMVEEREGDISDALHSDLAKPRMESYL 63
>02_05_0128 - 26059348-26059437,26059553-26059759
Length = 98
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/52 (36%), Positives = 33/52 (63%)
Frame = +3
Query: 345 VQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEA 500
V R+ + G T+ +EWR+ QL L+RM E ++ + +ALH DL + ++E+
Sbjct: 14 VAGVREEYESGRTKELEWRKAQLGGLIRMITEEEDAIFDALHDDLGKHRVES 65
>04_04_0660 -
27017692-27017928,27018101-27018250,27018337-27018427,
27018512-27018672,27018783-27019015,27019119-27019325,
27021411-27021507,27021636-27021677,27021802-27022056
Length = 490
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +3
Query: 345 VQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEA 500
V + R + G TR +EWR+ QL+ LLR+ E + AL +DL + + EA
Sbjct: 30 VAELRAAYESGRTRSLEWRQSQLRGLLRLLAEEEAAAFRALREDLGKHQAEA 81
>02_05_0131 +
26098459-26098668,26098788-26098863,26101972-26102178,
26102311-26102435,26102740-26102900,26102977-26103067,
26103161-26103310,26103396-26103632
Length = 418
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +3
Query: 345 VQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEA 500
V R+ + G T+ +EWR+ QLK L+R+ + + + LH DL + + E+
Sbjct: 15 VSGLREVYESGRTKDLEWRQSQLKALIRLLTDKEEEIFAVLHDDLGKHRGES 66
>12_01_0497 +
3946179-3946322,3947274-3947342,3948733-3948829,
3951827-3952033,3952149-3952264,3953189-3953293,
3953380-3953552,3953647-3953737,3953869-3954018,
3954482-3954724
Length = 464
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +3
Query: 345 VQKARDTFNRGTTRPIEWRRQQLKNLLRMYEE 440
V R F G TR EWR QL+ +LRM E
Sbjct: 13 VAALRGRFAAGGTRGAEWRAAQLRGILRMAAE 44
>07_03_1567 - 27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 365 FQSRHNQADRMAPSAAQESVKNV*GKPKRHGGGPTQGSETKQNG 496
F R D A + Q+ N+ GK + GGP Q + + NG
Sbjct: 1375 FLPRAPNLDNRASALLQKEFANLRGKSSKAKGGPRQAIDNESNG 1418
>09_06_0240 + 21797458-21799369,21799636-21799784
Length = 686
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 339 EAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKD 476
E KA D RGT E Q+LKN R +NV++E + D
Sbjct: 513 ELFNKAEDNMERGTEMWEEMEEQRLKN--RSKPSQENVVLEKMGLD 556
>04_04_1138 -
31162440-31163488,31163910-31164164,31164386-31164500,
31164523-31164579,31164580-31164632,31164721-31164981,
31165243-31165293,31165395-31165430,31165815-31166040,
31166082-31166132,31166346-31166465
Length = 757
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 71 VEFICIFYIKLKSF-YEFQFIATKVYQK*MH-Y*NVIRLGYFRVHIESYFFWKKLFNFL 241
V F+C+ Y+ + + + +F+ ++ K H + V R GY +H + F K LFN L
Sbjct: 546 VVFVCVKYLPVYTVPMDERFLVRRIGPKNFHIFRCVARYGYKDLHKKDEDFEKMLFNCL 604
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,873,084
Number of Sequences: 37544
Number of extensions: 378030
Number of successful extensions: 798
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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