Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0581
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)               31   0.76 
SB_35480| Best HMM Match : RVT_1 (HMM E-Value=0.0085)                  29   5.3  
SB_32837| Best HMM Match : RVT_1 (HMM E-Value=8.3e-17)                 29   5.3  
SB_27763| Best HMM Match : VapD_N (HMM E-Value=10)                     29   5.3  
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_39804| Best HMM Match : VapD_N (HMM E-Value=10)                     29   5.3  
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    29   5.3  
SB_20766| Best HMM Match : VapD_N (HMM E-Value=10)                     29   5.3  
SB_55916| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_5373| Best HMM Match : Lung_7-TM_R (HMM E-Value=6.6)                28   9.3  
SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   9.3  

>SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)
          Length = 599

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 22/75 (29%), Positives = 38/75 (50%)
 Frame = +3

Query: 306 TTSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRR 485
           TT  ++T+   E   K +  F +G    +E RRQ L++ L+  +E +     A  +  +R
Sbjct: 81  TTDDKRTIFTFE--DKRKQNFEKGRLE-LEKRRQDLQDKLKREKEEREAKERAEEERRQR 137

Query: 486 SKMEAILPRSRLLDQ 530
           +KMEA   R   L++
Sbjct: 138 AKMEAEQRRQAELEK 152


>SB_35480| Best HMM Match : RVT_1 (HMM E-Value=0.0085)
          Length = 243

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 481 DEAKWKPFYLEVDYLINDLRNTLHYLDEWTK 573
           D   ++P +   DY I  L+  LHYL++W K
Sbjct: 125 DSVLYRPIHDHSDYAI--LQQDLHYLEQWAK 153


>SB_32837| Best HMM Match : RVT_1 (HMM E-Value=8.3e-17)
          Length = 327

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 481 DEAKWKPFYLEVDYLINDLRNTLHYLDEWTK 573
           D   ++P +   DY I  L+  LHYL++W K
Sbjct: 148 DSVLYRPIHDHSDYAI--LQQDLHYLEQWAK 176


>SB_27763| Best HMM Match : VapD_N (HMM E-Value=10)
          Length = 243

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 481 DEAKWKPFYLEVDYLINDLRNTLHYLDEWTK 573
           D   ++P +   DY I  L+  LHYL++W K
Sbjct: 64  DSVLYRPIHDHSDYAI--LQQDLHYLEQWAK 92


>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2396

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 481  DEAKWKPFYLEVDYLINDLRNTLHYLDEWTK 573
            D   ++P +   DY I  L+  LHYL++W K
Sbjct: 1989 DSVLYRPIHDHSDYAI--LQQDLHYLEQWAK 2017


>SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1855

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 481  DEAKWKPFYLEVDYLINDLRNTLHYLDEWTK 573
            D   ++P +   DY I  L+  LHYL++W K
Sbjct: 1719 DSVLYRPIHDHSDYAI--LQQDLHYLEQWAK 1747


>SB_39804| Best HMM Match : VapD_N (HMM E-Value=10)
          Length = 194

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 481 DEAKWKPFYLEVDYLINDLRNTLHYLDEWTK 573
           D   ++P +   DY I  L+  LHYL++W K
Sbjct: 15  DSVLYRPIHDHSDYAI--LQQDLHYLEQWAK 43


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 730  VFPAAXVPAIGQKQQXQGIVPGALLRGPRPVRVIVYNHLRXECSRSL 590
            +F A    A GQ +     VP   L    P RV++Y   R +  R+L
Sbjct: 2751 LFNAGKARACGQSESMATPVPATTLAPVEPTRVVIYLFARDDKGRNL 2797


>SB_20766| Best HMM Match : VapD_N (HMM E-Value=10)
          Length = 182

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 481 DEAKWKPFYLEVDYLINDLRNTLHYLDEWTK 573
           D   ++P +   DY I  L+  LHYL++W K
Sbjct: 73  DSVLYRPIHDHSDYAI--LQQDLHYLEQWAK 101


>SB_55916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 481 DEAKWKPFYLEVDYLINDLRNTLHYLDEWTK 573
           D   ++P +   DY I  L+  LHYL++W K
Sbjct: 148 DSVLYRPIHDPSDYAI--LQQDLHYLEQWAK 176


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 339 EAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEAI 503
           +    A DT +RG    +E  ++Q+ +L   YEE    + E L + + R+  EA+
Sbjct: 134 DVADDASDTSSRGPYPAVEAIQEQMSSLQANYEEEIQTVKEQLQEQMLRAN-EAV 187


>SB_5373| Best HMM Match : Lung_7-TM_R (HMM E-Value=6.6)
          Length = 303

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +3

Query: 306 TTSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNLLR--MYEENQNVMVEAL 467
           +T++ KT++ +E V   ++ FN  +++ + +   Q  N      Y EN+ V V+++
Sbjct: 228 STTETKTVNTSEKVSNNKENFN--SSKKVSYNENQTVNTSEKVSYNENETVTVDSV 281


>SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +1

Query: 529 NDLRNTLHYLDEWTKPEHPPKGFVNILXEGGYIQ*PVRGVVLVI 660
           ND    L  L EW KP+    G VN + +  YI+    GV L+I
Sbjct: 37  NDAILALEKLSEWMKPQPVETGIVNKM-DTCYIKNEPLGVALII 79


>SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1846

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +3

Query: 273  ISKFKMTVGNLTTSKQ--KTMS-AAEAVQKARDTFNRGTTRPI--EWRRQQLKNLLRMYE 437
            + K K  +GNL  SKQ  K MS   +++   + + +R    P+  E  R Q+   LR Y+
Sbjct: 1718 VKKLKANIGNLFKSKQTNKKMSIGLKSLNGMKTSSDRREEEPLLMESERHQITAKLRKYQ 1777

Query: 438  ENQNVMVEAL 467
            ++   +  A+
Sbjct: 1778 DDSRKLDPAI 1787


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,906,420
Number of Sequences: 59808
Number of extensions: 428704
Number of successful extensions: 973
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)