Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0581
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016452-9|AAO26003.1|  494|Caenorhabditis elegans Aldehyde dehy...    50   1e-06
AF016452-8|AAM45357.1|  493|Caenorhabditis elegans Aldehyde dehy...    50   1e-06
AF016452-7|AAB66022.2|  493|Caenorhabditis elegans Aldehyde dehy...    50   1e-06
AF039039-7|AAB94178.1|  437|Caenorhabditis elegans Aldehyde dehy...    50   2e-06
Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical pr...    31   0.87 
AC024876-11|AAF60895.1|  365|Caenorhabditis elegans Hypothetical...    29   4.7  
Z68335-2|CAA92731.1|  390|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z70309-7|CAB54292.1|  209|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF016452-9|AAO26003.1|  494|Caenorhabditis elegans Aldehyde
           dehydrogenase protein4, isoform c protein.
          Length = 494

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 23/53 (43%), Positives = 34/53 (64%)
 Frame = +3

Query: 327 MSAAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRR 485
           M+  E V+  R  F  G T+P+++R+QQL  L +  EEN+  + EA+ KDLRR
Sbjct: 1   MAFTELVETQRKYFRTGETKPVKFRKQQLLKLKKFIEENREALSEAVWKDLRR 53



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 508 LEVDYLINDLRNTLHYLDEWTKPEHPPKGFVNILXEGGYIQ*PVRGVVLVI 660
           LE+   I ++   L  +D+W KP H  K F   L +   I+   +GVVL+I
Sbjct: 61  LEIGMTIQEIDYFLKNIDDWVKPTHVEKTFTTAL-DKPVIEKDPKGVVLII 110


>AF016452-8|AAM45357.1|  493|Caenorhabditis elegans Aldehyde
           dehydrogenase protein4, isoform b protein.
          Length = 493

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 23/53 (43%), Positives = 34/53 (64%)
 Frame = +3

Query: 327 MSAAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRR 485
           M+  E V+  R  F  G T+P+++R+QQL  L +  EEN+  + EA+ KDLRR
Sbjct: 1   MAFTELVETQRKYFRTGETKPVKFRKQQLLKLKKFIEENREALSEAVWKDLRR 53



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 508 LEVDYLINDLRNTLHYLDEWTKPEHPPKGFVNILXEGGYIQ*PVRGVVLVI 660
           LE+   I ++   L  +D+W KP H  K F   L +   I+   +GVVL+I
Sbjct: 61  LEIGMTIQEIDYFLKNIDDWVKPTHVEKTFTTAL-DKPVIEKDPKGVVLII 110


>AF016452-7|AAB66022.2|  493|Caenorhabditis elegans Aldehyde
           dehydrogenase protein4, isoform a protein.
          Length = 493

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 23/53 (43%), Positives = 34/53 (64%)
 Frame = +3

Query: 327 MSAAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRR 485
           M+  E V+  R  F  G T+P+++R+QQL  L +  EEN+  + EA+ KDLRR
Sbjct: 1   MAFTELVETQRKYFRTGETKPVKFRKQQLLKLKKFIEENREALSEAVWKDLRR 53



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 508 LEVDYLINDLRNTLHYLDEWTKPEHPPKGFVNILXEGGYIQ*PVRGVVLVI 660
           LE+   I ++   L  +D+W KP H  K F   L +   I+   +GVVL+I
Sbjct: 61  LEIGMTIQEIDYFLKNIDDWVKPTHVEKTFTTAL-DKPVIEKDPKGVVLII 110


>AF039039-7|AAB94178.1|  437|Caenorhabditis elegans Aldehyde
           dehydrogenase protein 5 protein.
          Length = 437

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 23/53 (43%), Positives = 33/53 (62%)
 Frame = +3

Query: 327 MSAAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRR 485
           MS    V+  R  FN G T+P E+R++QL  L ++ EEN+  + E + KDLRR
Sbjct: 1   MSLHRIVEAQRAYFNTGATKPAEFRKEQLLQLKKLIEENRAALTEVVWKDLRR 53


>Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical
           protein D2030.6 protein.
          Length = 824

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +3

Query: 291 TVGNLTTSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQL----KNLLRMYEENQNVMV 458
           T+    T  +++  A +  Q  R+ FN G +R +      +    +  +RMYEEN  + V
Sbjct: 149 TINIFNTIIRRSFDALQLTQLGRNYFNWGDSRAVPDYNMSILPGYETAIRMYEENFMLCV 208

Query: 459 EALHKDLRRSKM 494
           E   K +R   M
Sbjct: 209 ENRFKMVREESM 220


>AC024876-11|AAF60895.1|  365|Caenorhabditis elegans Hypothetical
           protein Y94H6A.2 protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 206 SYFFWKKLF--NFLRCGNNKY*TRNLKIQDDSRESYNIQTK 322
           SY ++K+ F  +F R G N +  R+L+ QD  R   N+Q K
Sbjct: 238 SYSYFKRNFKSSFNRNGCNAFVLRSLRTQDCKRHEENLQRK 278


>Z68335-2|CAA92731.1|  390|Caenorhabditis elegans Hypothetical
           protein C29F4.3 protein.
          Length = 390

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 564 LIQIMQSVPQIIDQVVDFEVEWLPFCFV 481
           LI ++ +VPQI+D  V     W+P+ F+
Sbjct: 240 LIIVILAVPQIVDYRVVLTTSWIPYHFL 267


>Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical
           protein T02G6.4 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 179 LGYFRVHIESYFFWKKLFNFLRCGNNKY*TRNLKIQDDSRESYNIQTKDDVSC 337
           LG   ++  + +F KK F F     N    +NLKIQ  S  +++ Q K  +SC
Sbjct: 58  LGIHAINSRTEYFLKKSFVFKSIFQNPTKHKNLKIQFLS--NFDFQIKSPLSC 108


>Z70309-7|CAB54292.1|  209|Caenorhabditis elegans Hypothetical
           protein R102.8 protein.
          Length = 209

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 484 EAKWKPFYLEVDYLIND-LRNTLHYLDEWTKPEHPP 588
           + KW PF  ++    ND  R+T + L EW + +  P
Sbjct: 68  KTKWDPFVFDITVYCNDKTRDTYNLLIEWWEDDTMP 103


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
           protein T28C6.9 protein.
          Length = 1861

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
 Frame = +3

Query: 378 TTRPIEWRRQQLKNLLRMYEENQNVM------VEALHKDLRRSK 491
           T + +E   ++LK LL  YEENQN +       EAL K L+ S+
Sbjct: 863 THQKLEQVGKKLKQLLSEYEENQNALDEQRKITEALEKRLQASE 906


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,223,945
Number of Sequences: 27780
Number of extensions: 333808
Number of successful extensions: 757
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)