Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0581
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34240.2 68417.m04866 aldehyde dehydrogenase (ALDH3) similar ... 56 3e-08
At4g34240.1 68417.m04867 aldehyde dehydrogenase (ALDH3) similar ... 56 3e-08
At4g36250.1 68417.m05156 aldehyde dehydrogenase family protein c... 44 8e-05
At1g44170.2 68414.m05102 aldehyde dehydrogenase, putative (ALDH)... 42 4e-04
At1g44170.1 68414.m05101 aldehyde dehydrogenase, putative (ALDH)... 42 4e-04
At4g16250.1 68417.m02465 phytochrome D (PHYD) nearly identical t... 36 0.022
At2g46200.2 68415.m05745 expressed protein low similarity to ES1... 31 0.62
At2g46200.1 68415.m05744 expressed protein low similarity to ES1... 31 0.62
At1g76250.1 68414.m08854 expressed protein 31 0.82
At5g01590.1 68418.m00074 expressed protein 29 2.5
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa... 28 5.8
At5g51650.1 68418.m06404 hypothetical protein 28 7.6
At4g32160.1 68417.m04574 phox (PX) domain-containing protein con... 28 7.6
>At4g34240.2 68417.m04866 aldehyde dehydrogenase (ALDH3) similar to
aldehyde dehydrogenase [Arabidopsis thaliana]
gi|17065876|emb|CAC84903; contains Pfam profile PF00171:
aldehyde dehydrogenase (NAD) family protein; identical
to cDNA aldehyde dehydrogenase (ALDH3 gene) GI:17065875,
aldehyde dehydrogenase [Arabidopsis thaliana]
GI:17065876
Length = 390
Score = 56.0 bits (129), Expect = 3e-08
Identities = 25/58 (43%), Positives = 37/58 (63%)
Frame = +3
Query: 333 AAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEAIL 506
AA V + R FN G T+ EWR QL+N+ RM +E + + EAL++DL + ++EA L
Sbjct: 75 AALLVDELRSNFNSGRTKSYEWRISQLQNIARMIDEKEKCITEALYQDLSKPELEAFL 132
>At4g34240.1 68417.m04867 aldehyde dehydrogenase (ALDH3) similar to
aldehyde dehydrogenase [Arabidopsis thaliana]
gi|17065876|emb|CAC84903; contains Pfam profile PF00171:
aldehyde dehydrogenase (NAD) family protein; identical
to cDNA aldehyde dehydrogenase (ALDH3 gene) GI:17065875,
aldehyde dehydrogenase [Arabidopsis thaliana]
GI:17065876
Length = 550
Score = 56.0 bits (129), Expect = 3e-08
Identities = 25/58 (43%), Positives = 37/58 (63%)
Frame = +3
Query: 333 AAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEAIL 506
AA V + R FN G T+ EWR QL+N+ RM +E + + EAL++DL + ++EA L
Sbjct: 75 AALLVDELRSNFNSGRTKSYEWRISQLQNIARMIDEKEKCITEALYQDLSKPELEAFL 132
>At4g36250.1 68417.m05156 aldehyde dehydrogenase family protein
contais aldehyde dehydrogenase (NADP) family protein
domain, Pfam:PF00171
Length = 484
Score = 44.4 bits (100), Expect = 8e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +3
Query: 339 EAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEA 500
E++++ R+TF G TR ++WR+ Q+ + M ++N++ + AL +DL + EA
Sbjct: 10 ESLREMRETFASGRTRSLKWRKAQIGAIYEMVKDNEDKICNALFQDLGKHSTEA 63
>At1g44170.2 68414.m05102 aldehyde dehydrogenase, putative (ALDH)
similar to aldehyde dehydrogenase ALDH [Craterostigma
plantagineum] gi|17065918|emb|CAC84900
Length = 484
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +3
Query: 318 QKTMSAAEA---VQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRRS 488
+K +AEA V + R +F+ G TR EWR QLK L+ + + ++ +V AL DL +
Sbjct: 4 KKVFGSAEASNLVTELRRSFDDGVTRGYEWRVTQLKKLMIICDNHEPEIVAALRDDLGKP 63
Query: 489 KMEAILPRSRLL 524
++E+ + LL
Sbjct: 64 ELESSVYEVSLL 75
>At1g44170.1 68414.m05101 aldehyde dehydrogenase, putative (ALDH)
similar to aldehyde dehydrogenase ALDH [Craterostigma
plantagineum] gi|17065918|emb|CAC84900
Length = 484
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +3
Query: 318 QKTMSAAEA---VQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRRS 488
+K +AEA V + R +F+ G TR EWR QLK L+ + + ++ +V AL DL +
Sbjct: 4 KKVFGSAEASNLVTELRRSFDDGVTRGYEWRVTQLKKLMIICDNHEPEIVAALRDDLGKP 63
Query: 489 KMEAILPRSRLL 524
++E+ + LL
Sbjct: 64 ELESSVYEVSLL 75
>At4g16250.1 68417.m02465 phytochrome D (PHYD) nearly identical to
SP|P42497 Phytochrome D {Arabidopsis thaliana}
Length = 1164
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 341 GRPKSSRHFQSRHNQADRMAPSAAQESVKNV*GKPKRHGGG 463
G SS H +SRH A A S+A +++++ +P+ HGGG
Sbjct: 12 GEAASSGHRRSRHTSAAEQAQSSANKALRSQNQQPQNHGGG 52
>At2g46200.2 68415.m05745 expressed protein low similarity to ES18
[Mus musculus] GI:4416181
Length = 382
Score = 31.5 bits (68), Expect = 0.62
Identities = 17/84 (20%), Positives = 38/84 (45%)
Frame = +3
Query: 279 KFKMTVGNLTTSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMV 458
K K ++ N K+K AAE K + F + EWR +++ + + ++ +
Sbjct: 135 KMKKSIRNKLWKKRKRRCAAEMRAKEPERFEQADREADEWREKEMAKDMANRKVDEMKAI 194
Query: 459 EALHKDLRRSKMEAILPRSRLLDQ 530
E + R ++E L + ++++
Sbjct: 195 EKIKAKRERKRLEPELELALIVEE 218
>At2g46200.1 68415.m05744 expressed protein low similarity to ES18
[Mus musculus] GI:4416181
Length = 382
Score = 31.5 bits (68), Expect = 0.62
Identities = 17/84 (20%), Positives = 38/84 (45%)
Frame = +3
Query: 279 KFKMTVGNLTTSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMV 458
K K ++ N K+K AAE K + F + EWR +++ + + ++ +
Sbjct: 135 KMKKSIRNKLWKKRKRRCAAEMRAKEPERFEQADREADEWREKEMAKDMANRKVDEMKAI 194
Query: 459 EALHKDLRRSKMEAILPRSRLLDQ 530
E + R ++E L + ++++
Sbjct: 195 EKIKAKRERKRLEPELELALIVEE 218
>At1g76250.1 68414.m08854 expressed protein
Length = 434
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 537 QIIDQVVDFEVEWLPFCFVSDPCVGPPP*RFGFPHTFLTDS*AADGA 397
Q+ Q V + + LPFC ++D PP R+G P L+ +GA
Sbjct: 283 QLTTQRVPYVTKPLPFCIMTDRTYDFPPYRYGVPVAALSSRGPLNGA 329
>At5g01590.1 68418.m00074 expressed protein
Length = 424
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 597 EAFWRMFRLSPLIQIMQSVPQIIDQVVDFEVE 502
+ +W FR SP++Q M +I D + E+E
Sbjct: 115 QKWWESFRASPVVQFMTRAEEIADDMNKMELE 146
>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
Length = 585
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 576 GTSSKRLREHSXRRWLYTMTRTGRGPRNKAPGTIPCXCCF 695
GT + L EH + + T+ G R+ AP TI C CF
Sbjct: 245 GTVTSLLEEHGTIKGVRYRTKEGNEFRSFAPLTIVCDGCF 284
>At5g51650.1 68418.m06404 hypothetical protein
Length = 206
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 402 RQQLKNLLRMYEENQNVMVEALHKDLRRSK 491
+QQLK LLR +E+ + +E L K+ + K
Sbjct: 160 KQQLKKLLREFEKKNDEFIEKLMKEKKLEK 189
>At4g32160.1 68417.m04574 phox (PX) domain-containing protein
contains Pfam profile PF00787: PX domain
Length = 723
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Frame = +3
Query: 312 SKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEE-------NQNVMVEALH 470
S++ S AE ++ + ++ ++ R+QQL++L R YEE + V+V+ +
Sbjct: 484 SREDGSSHAEPTVQSTISEKHVLSKELDARKQQLEDLSRRYEELEAKSKADMKVLVKEV- 542
Query: 471 KDLRRSKME 497
K LRRS +E
Sbjct: 543 KSLRRSHVE 551
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,198,316
Number of Sequences: 28952
Number of extensions: 303223
Number of successful extensions: 674
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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