Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0575
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 28 1.7
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 28 1.7
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 26 5.1
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 26 5.1
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 26 6.7
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 6.7
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 26 6.7
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 8.9
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.9
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 25 8.9
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 459 IRRGSHHHRAEEGTRRRQGREKGAHRTDRSRSQGD*GPER 578
I R S H R+ G +R Q R+K R S GP+R
Sbjct: 3 ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKR 42
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 459 IRRGSHHHRAEEGTRRRQGREKGAHRTDRSRSQGD*GPER 578
I R S H R+ G +R Q R+K R S GP+R
Sbjct: 3 ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKR 42
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 395 SSXDVTRCLKARRLRLWNRGCHQTGFSPSPRRGRYPT 505
SS TR + R RGC T P PR G T
Sbjct: 319 SSKGPTRLYEVARFNCTTRGCEYTQNIPCPRAGHSHT 355
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 602 LFSASWVPSLWSLISLR 552
L+S+SW+P+L L+S R
Sbjct: 285 LYSSSWIPTLHDLVSTR 301
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.8 bits (54), Expect = 6.7
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
Frame = +2
Query: 161 LPSPVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSIWTCSTSRRKRFR*RLPTGTS 340
L P++ P TTSD + V+S+P+ R S+ T + T ++
Sbjct: 260 LDEPIKALPSTTSDAPSSLLNTNVSSSPS--KFRKFLSSVIPAKTDLSAK---ESLTSST 314
Query: 341 WWKASTKRRKTSTGIFQGSSXDVTRCLKARRLRLWNRGC--HQTGFSPSP 484
S K RK S+G+ SS VT K R+ + N H T F P
Sbjct: 315 RLSTSYKTRKRSSGV-AFSSETVTSSSKERKRSVENEMLKPHPTIFESPP 363
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 169 ACPVLSEDYFRPWRQLAAAS 228
+CP+ +EDY++ + Q+ AAS
Sbjct: 242 SCPLCNEDYYKYFLQMDAAS 261
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 424 GAAPETVESRLSSDGVLTITAPRKVPD 504
G P T+ES ++ D L I RK+ D
Sbjct: 452 GTDPSTLESDIAEDAALQIDEVRKISD 478
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 175 PVLSEDYFRPWRQLAAASRDLGSSIKADKDKFQVNL 282
P SED P + L A ++ +K+D ++F+V++
Sbjct: 439 PTSSEDNLHPLQPLTTADEEMDLDLKSD-ERFKVDI 473
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 170 PVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSI 280
PVQ SP TSD+ D +L+ + P S+SI
Sbjct: 622 PVQVSPLFTSDKNDPLQLNPQSDDSTSSPKHGKSRSI 658
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 545 PVCAMGTFLSPLXASGTFLGAVMVRTP-SDDSRDSTVSGAAP 423
P + FL+P+ SGTF + P S R +T S A P
Sbjct: 384 PATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVP 425
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,869
Number of Sequences: 5004
Number of extensions: 49332
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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