Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0575
(758 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 61 1e-09
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 54 1e-07
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 54 1e-07
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 53 2e-07
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 53 3e-07
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 51 9e-07
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 48 6e-06
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 38 0.012
SB_32739| Best HMM Match : PA (HMM E-Value=0.19) 31 0.77
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_30696| Best HMM Match : ERCC4 (HMM E-Value=5.9) 30 1.8
SB_16717| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_10409| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_3054| Best HMM Match : RVT_1 (HMM E-Value=1.6e-09) 30 1.8
SB_35239| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09) 29 5.4
SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06) 28 7.2
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0) 28 7.2
SB_49471| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 60.9 bits (141), Expect = 1e-09
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = +1
Query: 256 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 432
D DKFQ+ LDV+ F PEEI+ K +G I V + S++F R Y LPEG
Sbjct: 2 DADKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEEG-FDSKEFRRCYNLPEGVD 60
Query: 433 PETVESRLSSDGVLTITAPRKVPDAXKGERKVP 531
++ +R++ DG+L + A +K P A E K P
Sbjct: 61 ESSISTRIAEDGMLHVEALKKSPPATT-ENKAP 92
Score = 48.8 bits (111), Expect = 5e-06
Identities = 28/80 (35%), Positives = 39/80 (48%)
Frame = +1
Query: 256 DKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAP 435
D KF + LDV F PEE+ VK G+ + + +RQF R + LP
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLPREVDM 154
Query: 436 ETVESRLSSDGVLTITAPRK 495
+T+ RL DGVL I A ++
Sbjct: 155 DTLVPRLGKDGVLYIEADKR 174
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 54.4 bits (125), Expect = 1e-07
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +1
Query: 253 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 429
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60
Query: 430 APETVESRLSSDGVLTITAPRKVPDAXKGERK 525
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 36.7 bits (81), Expect = 0.020
Identities = 24/101 (23%), Positives = 43/101 (42%)
Frame = +1
Query: 232 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 411
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 412 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAXKGERKVPI 534
LP +++ +RL +G L A ++ A R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 54.4 bits (125), Expect = 1e-07
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +1
Query: 253 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 429
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60
Query: 430 APETVESRLSSDGVLTITAPRKVPDAXKGERK 525
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 36.7 bits (81), Expect = 0.020
Identities = 24/101 (23%), Positives = 43/101 (42%)
Frame = +1
Query: 232 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 411
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 412 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAXKGERKVPI 534
LP +++ +RL +G L A ++ A R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +1
Query: 235 LGSSIKADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 411
L ++ + + DK ++ LDV+++ PEEIS+K G I + Y + +F R Y
Sbjct: 29 LAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHG-YETSEFHRSY 87
Query: 412 ALPEGAAPETVESRLSSDGVLTITAPRKVP 501
LP+G TV SR++ DG+L I A + P
Sbjct: 88 NLPDGVDVSTVSSRITGDGLLHIEALKAEP 117
Score = 27.5 bits (58), Expect(2) = 0.13
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 214 LAAASRDLGSSIKADKDKFQVNLDVQHFSPE 306
+ A++ G K D +F V LDV FSP+
Sbjct: 125 VGASTGSAGDIAKIDDKRFTVTLDVSSFSPD 155
Score = 25.4 bits (53), Expect(2) = 0.13
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 403 RRYALPEGAAPETVESRLSSDGVLTITAPR 492
R + LP+ +++ SRL DG L I A R
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKR 190
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 52.8 bits (121), Expect = 3e-07
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +1
Query: 253 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 429
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60
Query: 430 APETVESRLSSDGVLTITAPRKVPDAXKGERK 525
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +1
Query: 262 DKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPE 438
D+ ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVEAS 297
Query: 439 TVESRLSSDGVLTITAPRKVPDAXKGERK 525
V++R+S+ G L I A + +P GE +
Sbjct: 298 NVKTRISNHGQLHIEAMKALPGPDGGEEE 326
Score = 36.7 bits (81), Expect = 0.020
Identities = 24/101 (23%), Positives = 43/101 (42%)
Frame = +1
Query: 232 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 411
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 321 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 379
Query: 412 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAXKGERKVPI 534
LP +++ +RL +G L A ++ A R++ +
Sbjct: 380 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 420
Score = 36.3 bits (80), Expect = 0.027
Identities = 24/101 (23%), Positives = 43/101 (42%)
Frame = +1
Query: 232 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 411
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 412 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAXKGERKVPI 534
LP +++ +RL +G L A ++ A R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKL 186
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 52.8 bits (121), Expect = 3e-07
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +1
Query: 253 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 429
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60
Query: 430 APETVESRLSSDGVLTITAPRKVPDAXKGERK 525
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 36.7 bits (81), Expect = 0.020
Identities = 24/101 (23%), Positives = 43/101 (42%)
Frame = +1
Query: 232 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 411
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 412 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAXKGERKVPI 534
LP +++ +RL +G L A ++ A R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 51.2 bits (117), Expect = 9e-07
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +1
Query: 253 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 429
A K+ ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 2 AKKNTLEIAKLDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFEL-KEFRRTFTLPEGI 60
Query: 430 APETVESRLSSDGVLTITAPRKVP 501
PE V SR+S+ G L I A + +P
Sbjct: 61 DPENVTSRISNHGHLHIEARKALP 84
Score = 42.3 bits (95), Expect = 4e-04
Identities = 26/95 (27%), Positives = 44/95 (46%)
Frame = +1
Query: 250 KADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 429
KA +DKF + +DV F PE I V+ ++V Y + F R++ LP
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQVLGNELLV-NANHEVEHEGHYHAMHFNRQFVLPREV 150
Query: 430 APETVESRLSSDGVLTITAPRKVPDAXKGERKVPI 534
+++ +RL +G L A + V A R++ +
Sbjct: 151 DMDSLTTRLDKEGKLHFEAKKSVAPALPPVRELMV 185
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 48.4 bits (110), Expect = 6e-06
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Frame = +1
Query: 256 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 432
+++K ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 4 NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 62
Query: 433 PETVESRLSSDGVLTITAPRKV--PDAXKGERK 525
V++R+S+ G L I A + + PD K E K
Sbjct: 63 ASNVKTRISNHGQLHIEAMKALPEPDGAKKESK 95
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/99 (24%), Positives = 46/99 (46%)
Frame = +1
Query: 238 GSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYAL 417
G+ ++ DKF + +DV+ F PE I V+ ++V Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFIL 147
Query: 418 PEGAAPETVESRLSSDGVLTITAPRKVPDAXKGERKVPI 534
P +++ +RL +G L A ++ A R++ +
Sbjct: 148 PREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 37.5 bits (83), Expect = 0.012
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +1
Query: 223 ASRDLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFV 402
A+++ S+ D KF + LDV F PEE+ VK G+ + + +RQF
Sbjct: 13 ATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFN 71
Query: 403 RRYALPE 423
R + LP+
Sbjct: 72 RHFVLPQ 78
>SB_32739| Best HMM Match : PA (HMM E-Value=0.19)
Length = 319
Score = 31.5 bits (68), Expect = 0.77
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +2
Query: 170 PVQCSPKTTSDRGDNSRLHLVTSAP---A*RPTRTSSKSIWTCSTS 298
P+ P++ R D R L S P A T T S S+WTCS S
Sbjct: 273 PLDLKPRSNVMRVDEGRYELKLSCPFHCAFSHTLTDSHSLWTCSNS 318
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 228 RCSRELSPRSEVVFGEHWTGDGSQHVVR 145
R SR SP + FG TGDG QH+V+
Sbjct: 100 RASRTPSPSDSIDFGAVETGDGLQHLVK 127
>SB_30696| Best HMM Match : ERCC4 (HMM E-Value=5.9)
Length = 260
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 487 PRKVPDAXKGERKVPIAQTGPVRKEIKDQSEGTQDAE 597
PR+ P+ + R +P P+R+E +D S +D++
Sbjct: 146 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 182
>SB_16717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 735
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 487 PRKVPDAXKGERKVPIAQTGPVRKEIKDQSEGTQDAE 597
PR+ P+ + R +P P+R+E +D S +D++
Sbjct: 588 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 624
>SB_10409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 487 PRKVPDAXKGERKVPIAQTGPVRKEIKDQSEGTQDAE 597
PR+ P+ + R +P P+R+E +D S +D++
Sbjct: 34 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 70
>SB_3054| Best HMM Match : RVT_1 (HMM E-Value=1.6e-09)
Length = 829
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 487 PRKVPDAXKGERKVPIAQTGPVRKEIKDQSEGTQDAE 597
PR+ P+ + R +P P+R+E +D S +D++
Sbjct: 706 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 742
>SB_35239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 487 PRKVPDAXKGERKVPIAQTGPVRKEIKDQSEGTQDAE 597
PR+ P+ + R +P P+R+E +D S +D++
Sbjct: 100 PRRPPEGKRRRRILPQVPPRPIRQEAQDDSSSAEDSD 136
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +2
Query: 473 SPSPRRGRY---PTPXRERERCPSHRPVP 550
SP PRR R P+P R R R PS+ P P
Sbjct: 916 SPPPRRRRKSPSPSPPRRRRRSPSNSPPP 944
>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 487 PRKVPDAXKGERKVPIAQTGPVRKEIKDQSEGTQDAE 597
PR+ P+ + R +P P+R E +D S +D++
Sbjct: 1326 PRRPPEGKRRRRILPQVPPRPIRHEAQDDSSSAEDSD 1362
>SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09)
Length = 1111
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 460 SDGVLTITAPRKVPDAXKGE-RKVPIAQTGPVRKEI 564
SD T + PD KGE RKVP+A P++ EI
Sbjct: 285 SDSSPTSDPVSEFPDVFKGEVRKVPLAVREPLKNEI 320
>SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06)
Length = 353
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = -3
Query: 252 LYAGAEVTRCSRELSPRSEVVFGE----HWTGDGSQH 154
LY+ V + +RE+ R ++ F E HWTG G H
Sbjct: 83 LYSSGNVNQAAREMGKR-DIDFMEISETHWTGQGKMH 118
>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1238
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 441 CGIAAVIRRGSHHHRAEE 494
CG++ ++RRG +HH EE
Sbjct: 23 CGVSRILRRGYNHHLNEE 40
>SB_49471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 418 AARNVXRTALKYTRARLSSLRACLPPRCTRRQSSPKSLPARSAARPD 278
A R T +++TR+R + L+ CL R R +P +L + R D
Sbjct: 25 AKREDNYTRIRFTRSRRAKLQQCLYERFFRELHAPWALEDNNGERLD 71
>SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3
Query: 486 AEEGTRRRQGREKGAHRTDRSRSQGD*GPE 575
A RR + R++GA +++ +R++G+ GPE
Sbjct: 352 ATPSQRRLEARKRGALKSEGTRTEGNRGPE 381
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,118,406
Number of Sequences: 59808
Number of extensions: 428628
Number of successful extensions: 1482
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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