Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0575
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote...    35   0.051
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS...    34   0.12 
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS...    34   0.12 
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote...    33   0.21 
At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE) i...    31   0.83 
At4g21870.1 68417.m03163 26.5 kDa class P-related heat shock pro...    30   1.5  
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ...    29   2.5  
At4g14830.1 68417.m02280 expressed protein                             29   3.4  
At2g28680.1 68415.m03486 cupin family protein similar to legumin...    29   3.4  
At5g18190.1 68418.m02135 protein kinase family protein contains ...    28   5.9  
At4g36850.1 68417.m05225 PQ-loop repeat family protein / transme...    28   5.9  
At3g49540.1 68416.m05414 expressed protein                             28   5.9  
At1g76770.1 68414.m08934 heat shock protein-related contains sim...    28   7.7  

>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
           (HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
           heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
           (GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
           17 (19), 7995 (1989))
          Length = 157

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +1

Query: 388 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAXKGERKVPIA 537
           S +F RR+ LPE A  E +++ +  +GVL++T P KVP+     + + I+
Sbjct: 109 SGKFTRRFRLPENAKMEEIKASM-ENGVLSVTVP-KVPEKKPEVKSIDIS 156


>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
           (HSP18.1-CI) identical to 18.2 kDa class I heat shock
           protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
           contains Pfam profile: PF00011 Hsp20/alpha crystallin
           family
          Length = 161

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = +1

Query: 388 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAXKGERKVPIA 537
           S +F+RR+ LPE A  E V++ +  +GVLT+  P K P+     + + I+
Sbjct: 111 SGKFMRRFRLPENAKMEEVKATM-ENGVLTVVVP-KAPEKKPQVKSIDIS 158


>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
           (HSP17.4-CI) identical to 17.4 kDa class I heat shock
           protein SP:P19036 from [Arabidopsis thaliana]
          Length = 156

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/50 (38%), Positives = 32/50 (64%)
 Frame = +1

Query: 388 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAXKGERKVPIA 537
           S +F+RR+ LPE A  E V++ +  +GVL++T P KV ++    + V I+
Sbjct: 108 SGKFMRRFRLPENAKVEEVKASM-ENGVLSVTVP-KVQESKPEVKSVDIS 155


>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
           (HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
           crystallin family; identified in Scharf, K-D., et al,
           Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 153

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 388 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 492
           S QF RR+ LPE    + V++ +  +GVLT+T P+
Sbjct: 105 SGQFTRRFRLPENVKMDQVKAAM-ENGVLTVTVPK 138


>At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE)
           identical to C2H2 zinc-finger protein SERRATE
           GI:14486602 from [Arabidopsis thaliana]
          Length = 720

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +3

Query: 495 GTRRRQGREKGAHRTDRSRSQGD*GPERGNPG 590
           G R R GR  G  R DRS  Q     + GNPG
Sbjct: 582 GRRERDGRANGNDRNDRSEDQQRGDNDGGNPG 613


>At4g21870.1 68417.m03163 26.5 kDa class P-related heat shock
           protein (HSP26.5-P) contains Pfam profile: PF00011
           Hsp20/alpha crystallin family: identified in Scharf,
           K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 134

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/79 (22%), Positives = 33/79 (41%)
 Frame = +1

Query: 262 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 441
           D    ++D+     EEI V+  D   ++               + F R++ LPE      
Sbjct: 35  DSHTFSVDLPGLRKEEIKVEIEDSIYLIIRTEATPMSPPDQPLKTFKRKFRLPESIDMIG 94

Query: 442 VESRLSSDGVLTITAPRKV 498
           + +    DGVLT+  P+++
Sbjct: 95  ISAGYE-DGVLTVIVPKRI 112


>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
           protein 
          Length = 710

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = +3

Query: 462 RRGSHHHRAEEGTR-----RRQGREKGAHRTDRSRSQGD 563
           R   HHH+  E +R     R + RE+  HR +R R  GD
Sbjct: 619 REREHHHKDRERSREHVRDRERERERDRHREERERYGGD 657


>At4g14830.1 68417.m02280 expressed protein
          Length = 152

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 400 VRRYALPEGAAPETVESRLSSDGVLTITAPR 492
           V R+ LPE   PE V      DG L +T P+
Sbjct: 109 VWRFRLPESTRPELVTVDCDGDGELIVTVPK 139


>At2g28680.1 68415.m03486 cupin family protein similar to legumin
           (11S-globulin) from Ginkgo biloba [GI:949869], 11S
           globulin from Avena sativa [GI:472867]; contains a 11-S
           plant seed storage protein signature (PS00305)
          Length = 356

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +1

Query: 388 SRQFV-RRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAXKGERK--VPIAQTGPVRK 558
           S +FV R + L E    + V S+ + +G++ + A  K+P+  KG+RK  V      P+  
Sbjct: 141 STEFVGRAWDLDETTVKKLVGSQ-TGNGIVKVDASLKMPEPKKGDRKGFVLNCLEAPLDV 199

Query: 559 EIKD 570
           +IKD
Sbjct: 200 DIKD 203


>At5g18190.1 68418.m02135 protein kinase family protein contains
           Pfam domains, PF00069: Protein kinase domain
          Length = 691

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 198 QTVETTRGCIS*PRLQHKGRQG 263
           Q   T  GC   P + HKGRQG
Sbjct: 185 QVYNTLNGCYGVPAVHHKGRQG 206


>At4g36850.1 68417.m05225 PQ-loop repeat family protein /
           transmembrane family protein similar to SP|Q10482 Seven
           transmembrane protein 1 {Schizosaccharomyces pombe};
           contains Pfam profile PF04193: PQ loop repeat
          Length = 374

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -1

Query: 602 LFSASWVPSLWSLISLRTGPVCAMGT--FLSPLXASGTFLGAVMVRTPSDDS 453
           ++    +P +W  ++++ G V  +    F+  L A+ T++G+++VRT   D+
Sbjct: 269 IYMGGRIPQIW--LNIKRGSVEGLNPLMFIFALVANATYVGSILVRTTEWDN 318


>At3g49540.1 68416.m05414 expressed protein 
          Length = 166

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +1

Query: 421 EGAAPETVESRLSSDGVLTITAPRKVPDAXKGERKV---PI-AQTGPVRKEIKDQSEGTQ 588
           E AA E  E+++ +   + + AP KV  A + E+K    P+ A+  PV+ E +   E ++
Sbjct: 100 ENAATENAEAKVEA---VAVAAPEKVEVAVEAEKKAEAEPVKAEAEPVKAEAEPVKEESK 156

Query: 589 DAENK 603
             E +
Sbjct: 157 QEEKE 161


>At1g76770.1 68414.m08934 heat shock protein-related contains
           similarity to 17.9 kDa heat-shock protein [Helianthus
           annuus] gi|11990130|emb|CAB55634
          Length = 244

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 391 RQFVRRYALPEGAAPETVESRLSS-DGVLTITAPRKV 498
           ++F + + +P+    + +++R +  DG LT+T P+KV
Sbjct: 93  KEFKKVFRIPDIVILDKIKARFNEEDGTLTVTMPKKV 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,591,309
Number of Sequences: 28952
Number of extensions: 291694
Number of successful extensions: 950
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)