Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0574
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49160.2 68414.m05512 protein kinase family protein contains ... 36 0.020
At1g49160.1 68414.m05511 protein kinase family protein contains ... 36 0.020
At2g40480.1 68415.m04996 expressed protein contains Pfam profile... 33 0.14
At5g56860.1 68418.m07095 zinc finger (GATA type) family protein ... 32 0.32
At3g56270.1 68416.m06253 expressed protein contains Pfam PF05701... 32 0.32
At5g61560.1 68418.m07725 protein kinase family protein contains ... 31 0.56
At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putat... 31 0.56
At3g18750.1 68416.m02380 protein kinase family protein contains ... 31 0.56
At3g52900.1 68416.m05830 expressed protein contains Pfam profile... 30 1.3
At2g32360.1 68415.m03955 ubiquitin family protein contains INTER... 30 1.3
At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co... 29 2.2
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 29 2.2
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 29 2.2
At4g12020.1 68417.m01912 protein kinase family protein similar t... 29 3.0
At1g32120.1 68414.m03952 expressed protein contains Pfam profile... 29 3.0
At4g35590.1 68417.m05056 RWP-RK domain-containing protein low si... 29 3.9
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 3.9
At1g69060.1 68414.m07902 expressed protein 29 3.9
At3g21350.1 68416.m02696 RNA polymerase transcriptional regulati... 28 5.2
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 28 5.2
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 28 5.2
At5g64180.1 68418.m08058 expressed protein 28 6.8
At5g15890.1 68418.m01859 expressed protein 28 6.8
At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related si... 28 6.8
At2g40935.1 68415.m05053 expressed protein low similarity to PGP... 28 6.8
At2g36100.1 68415.m04433 integral membrane family protein contai... 28 6.8
At5g22090.1 68418.m02572 expressed protein 27 9.0
At3g15270.1 68416.m01929 squamosa promoter-binding protein-like ... 27 9.0
>At1g49160.2 68414.m05512 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 557
Score = 36.3 bits (80), Expect = 0.020
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +2
Query: 224 DY*PRSCLTNQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMER-- 397
DY PRS ++ V D E G L EEEDERLK+ I+ RE +
Sbjct: 478 DYCPRS--DDEANPTVAATTEDQEA--EKPGSLEEEEEDERLKEELEKIEERFREEMKEI 533
Query: 398 -RKRVEALMSSK--LFREELERV 457
RKR EA M +K F +++++V
Sbjct: 534 TRKREEATMETKNRFFEKKMQQV 556
>At1g49160.1 68414.m05511 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 539
Score = 36.3 bits (80), Expect = 0.020
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +2
Query: 224 DY*PRSCLTNQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMER-- 397
DY PRS ++ V D E G L EEEDERLK+ I+ RE +
Sbjct: 460 DYCPRS--DDEANPTVAATTEDQEA--EKPGSLEEEEEDERLKEELEKIEERFREEMKEI 515
Query: 398 -RKRVEALMSSK--LFREELERV 457
RKR EA M +K F +++++V
Sbjct: 516 TRKREEATMETKNRFFEKKMQQV 538
>At2g40480.1 68415.m04996 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 541
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +2
Query: 329 EEEDERLKQRPADIDAD--VREMERRKRVEALMSSKLFREELERVLDQQMHEGGDAPLLQ 502
E + +R+++ A+++ D V+E+E +EAL S+K E+L+R L Q+ D L
Sbjct: 116 EFDIKRMEEHAAELEKDLIVKELETLDVLEALGSTKRIVEDLKRQLQQEALRCSD-QLSS 174
Query: 503 RIKEMVGGRLH 535
IKEM H
Sbjct: 175 DIKEMNDEHCH 185
>At5g56860.1 68418.m07095 zinc finger (GATA type) family protein
similar to unknown protein (pir |T04270)
Length = 398
Score = 32.3 bits (70), Expect = 0.32
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = -3
Query: 254 DLSSKTWVSNPVARVLQESCT-----VQQMARRSDKLDDHYTQNSHTNLNGDRNRH*ARN 90
D S W+ +P R+++++ T + Q + K DHY N TN + D +
Sbjct: 139 DSDSDKWLMSPKMRLIKKTITNNKQLIDQTNNNNHKESDHYPLNHKTNFDEDHHEDLNFK 198
Query: 89 IIFVKTRTYRSLYNFYST 36
+ + T + N Y+T
Sbjct: 199 NVLTRKTTAATTENRYNT 216
>At3g56270.1 68416.m06253 expressed protein contains Pfam PF05701:
Plant protein of unknown function (DUF827)
Length = 446
Score = 32.3 bits (70), Expect = 0.32
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +2
Query: 329 EEEDERLKQRPADIDADV--REMERRKRVEALMSSKLFREELERVLDQQMHEGGDAP--L 496
E + +R++++ +++ D+ +E+E +EAL S+K E+L+ L QQ + P L
Sbjct: 72 EFDIKRMEEQTVELEKDLIMKELETLDLLEALGSTKRIFEDLKWQLQQQALRCKETPQHL 131
Query: 497 LQRIKEMVGGRLHTGSLR 550
KEMV H L+
Sbjct: 132 RSHSKEMVDEHCHRNPLK 149
>At5g61560.1 68418.m07725 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 796
Score = 31.5 bits (68), Expect = 0.56
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = +2
Query: 332 EEDERLKQ---RPADIDADVREMERRKRVEALMSSKLFREELERVLDQQMHEGGDAPLLQ 502
EE RLK R + D +V EMER ++ +A ++L RE +ER ++++ A ++
Sbjct: 336 EEATRLKNLTIREEEAD-EVVEMERERQEDAENEAELVRECIERETEERLEAEARAEEVR 394
Query: 503 RIKEMVGGRLHTGSLR 550
+ K+ + L G L+
Sbjct: 395 KEKQRLEDALEGGPLQ 410
>At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putative
/ citrate hydro-lyase/aconitase, putative strong
similarity to SP|P49608 Aconitate hydratase, cytoplasmic
(EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
{Cucurbita maxima}; contains Pfam profiles PF00330:
Aconitase family (aconitate hydratase), PF00694:
Aconitase C-terminal domain
Length = 995
Score = 31.5 bits (68), Expect = 0.56
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +3
Query: 330 RRKTSA*SSVRPTSTPMSAKWNAGSASKLSCPRSCSAKNWNGSSTSRCTRAATLRSCRGS 509
RR TS S + ++ + + +S P + S +N S S + + R C S
Sbjct: 3 RRATSGVRSASARLSSSLSRIASSETASVSAPSASSLRNQTNRSKSFSSALRSFRVCSAS 62
Query: 510 RRWSAG 527
RWS G
Sbjct: 63 TRWSHG 68
>At3g18750.1 68416.m02380 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 567
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +2
Query: 272 GMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMERR---KRVEALMSSK 430
G ++ + + T P+S EEE ERL+Q +I+A +E + KR EA+M +K
Sbjct: 504 GEDKSSIQEVEEATEPVSLEEE-ERLRQELEEIEAKYQEDMKEIATKREEAIMETK 558
>At3g52900.1 68416.m05830 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 164
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 305 NGTGPLSTEEEDERLKQRPADIDADVREMERRK-RVEALMSSKL-FREELERVLDQQMHE 478
NG P+ EE+E K A E+ER+K V+ + +L F EE R L Q + E
Sbjct: 18 NGKLPMEDNEEEEIWKVAVTRFQAREEEIERKKMTVKEKVQQRLGFAEEATRCLTQTLEE 77
>At2g32360.1 68415.m03955 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 175
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 329 EEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERV 457
EEED+ +K D D V E E K E +K +EE V
Sbjct: 124 EEEDQAMKDEEEDRDVKVEEDEEEKEKEKDGEAKYVKEEAREV 166
>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 587
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 275 MAETDSETIPNGTGPLSTEEEDERLKQRPAD 367
MAE D + T P + EEEDE +++P D
Sbjct: 70 MAEGDDDQAEEETNPEAEEEEDEEEEEKPDD 100
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 396 AGSASKLSCPRSCSAKNWNGSSTSRCTRAATLR 494
AG ++ +SC + K W+G S CTR TLR
Sbjct: 93 AGESTLVSCSSDTTVKTWDGLSDGVCTR--TLR 123
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 396 AGSASKLSCPRSCSAKNWNGSSTSRCTRAATLR 494
AG ++ +SC + K W+G S CTR TLR
Sbjct: 93 AGESTLVSCSSDTTVKTWDGLSDGVCTR--TLR 123
>At4g12020.1 68417.m01912 protein kinase family protein similar to
mitogen-activated protein kinase [Arabidopsis thaliana]
GI:1255448; contains Pfam profiles PF02671: Paired
amphipathic helix repeat, PF03106: WRKY DNA-binding
domain, PF00560: Leucine Rich Repeat, PF00069: Protein
kinase domain, PF00931: NB-ARC domain
Length = 1798
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 366 TSTPMSAKWNAGSASKLSCPRSCSAKNWNGSSTSRCTRAATLRSCRGSR 512
+S P S +N + +L+ P SC+ K W G CT ++L + R
Sbjct: 1218 SSLPKS--FNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMR 1264
>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 1206
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/85 (27%), Positives = 39/85 (45%)
Frame = +3
Query: 273 EWLRRTQRRSRTAPDPCPPRRKTSA*SSVRPTSTPMSAKWNAGSASKLSCPRSCSAKNWN 452
EW++R+ R + +PD + SS R T +P + N + S PRS + +
Sbjct: 570 EWVQRSSHRPKKSPDRSSDEPEWVETSSARSTKSPARSSDNLKWVQR-SSPRSTKSPD-- 626
Query: 453 GSSTSRCTRAATLRSCRGSRRWSAG 527
S+ R A ++ +G+ R S G
Sbjct: 627 -RSSGRA--ADDVKDLKGALRGSGG 648
>At4g35590.1 68417.m05056 RWP-RK domain-containing protein low
similarity to minus dominance protein [Chlamydomonas
reinhardtii] GI:1928929; contains Pfam profile: PF02042
RWP-RK domain
Length = 370
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +2
Query: 233 PRSCLTNQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMERRKRVE 412
PR + Q + +ET+SE N S E D K ++ DA ++++KR
Sbjct: 179 PRKLVLKQDLNCLPDSETESEESVNEKTEHSEFEND---KTEQSESDAKTEILKKKKRTP 235
Query: 413 ALMSSKLFREELERVLD 463
+ ++L EEL + D
Sbjct: 236 SRHVAELSLEELSKYFD 252
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 307 RHRTPVHRGGRRALEAASG--RHRRRCPRNG-TPEARRSSHVLEAVP 438
R TPV+R RR+ A+ R RRR P + +P RS VL P
Sbjct: 584 RSPTPVNRRSRRSSSASRSPDRRRRRSPSSSRSPSRSRSPPVLHRSP 630
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Frame = +1
Query: 292 RDDPERHRTPVHRGGRRALEAASGRHRRRCP-----RNGTPEARR 411
R RHR P H GRR A S R R P R+ +P ARR
Sbjct: 286 RSPIRRHRRPTHE-GRRQSPAPSRRRRSPSPPARRRRSPSPPARR 329
>At1g69060.1 68414.m07902 expressed protein
Length = 630
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +2
Query: 329 EEEDERLKQRPADIDADVREMER-RKRVEALMSSKLFREELERVLDQQMHEGGDAPLLQR 505
+EE+ +QR I AD + +R R+++E + ++ R + ERV + + + D +
Sbjct: 480 QEEEWESRQRQLQIQADEAQKQRKRRKLENMRKLEMERRQKERVEEVRETQKKDEENM-N 538
Query: 506 IKEMVGGRLHTGSLRVWLRCSYLYAAV 586
+KE V + T SL++ S+ AA+
Sbjct: 539 MKEKVRAEI-TKSLKLLELKSFNMAAL 564
>At3g21350.1 68416.m02696 RNA polymerase transcriptional regulation
mediator-related contains weak similarity to RNA
polymerase transcriptional regulation mediator, subunit
6 homolog (Activator-recruited cofactor 33 kDa
component) (ARC33) (NY-REN-28 antigen)
(Swiss-Prot:O75586) [Homo sapiens]
Length = 257
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +2
Query: 269 VGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFRE 442
+ A TD+ + + TE ++E + +PA D++EM KRV+ +++S L+R+
Sbjct: 152 ISKAFTDAASKLETIRQVDTENQNEPAESKPASETVDLKEM---KRVDVILTS-LYRK 205
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 28.3 bits (60), Expect = 5.2
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = -3
Query: 437 GTASRT*ELRRASGVPFRG-HRRRCRPDAASSARLPPRW--TGVRCRSGSSLSPSQPFRQ 267
G++SR+ R+ P R R R R + SS+ P R +G R SP+ P R+
Sbjct: 15 GSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPPRRGKSPAGPARR 74
Query: 266 LESIDLSSKTWVSNPVARVLQES 198
S S+P + +QES
Sbjct: 75 GRSPPPPPSKGASSPSKKAVQES 97
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 28.3 bits (60), Expect = 5.2
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = -3
Query: 437 GTASRT*ELRRASGVPFRG-HRRRCRPDAASSARLPPRW--TGVRCRSGSSLSPSQPFRQ 267
G++SR+ R+ P R R R R + SS+ P R +G R SP+ P R+
Sbjct: 15 GSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPPRRGKSPAGPARR 74
Query: 266 LESIDLSSKTWVSNPVARVLQES 198
S S+P + +QES
Sbjct: 75 GRSPPPPPSKGASSPSKKAVQES 97
>At5g64180.1 68418.m08058 expressed protein
Length = 158
Score = 27.9 bits (59), Expect = 6.8
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Frame = +2
Query: 236 RSCLTNQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQRPADID---ADVREMERRKR 406
R+ L ++ R + + E +T+ T R ++R A+ A+ R + K
Sbjct: 47 RASLVSEQARTIKVLEQRVQTLERELDAAITAAAHARSEKRQAESSQKAAESRAQDVTKE 106
Query: 407 VEALMSS-KLFREELERVLDQQMHEGGDAPLLQRIKEMVGGRLHTG 541
+E KL EEL + +Q + LL+ I + +GG+ G
Sbjct: 107 LENTTKVFKLHMEELRGMQEQISKRDNEIKLLEAIIQTLGGKERLG 152
>At5g15890.1 68418.m01859 expressed protein
Length = 526
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 309 APDPCPPRRKTSA*SSVRPTSTPMSAKWNAGSASKLS 419
+P P PP R +SA S P + P+ A N S L+
Sbjct: 125 SPVPAPPHRNSSADQSPSPVNGPIPAPLNHTSLRHLN 161
>At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related
similar to ubiquitin-conjugating enzyme (GI:3319990)
[Mus musculus]; similar to Baculoviral IAP
repeat-containing protein 6 (Ubiquitin-conjugating
BIR-domain enzyme apollon) (Swiss-Prot:Q9NR09) [Homo
sapiens];
Length = 609
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 363 PTSTPMSAKWNAGSASKLSCPRSCSAKNWNGSSTS-RCTRAATLRSCRGSRRWSAGDCTP 539
PT +S W SA K S S S+ NG+++S + T+A+ + S ++S+ TP
Sbjct: 137 PTGVEVSMDWFPNSADKESASSSKSSHANNGNNSSKKATKASGIHS-----QFSSDMETP 191
Query: 540 EASGYGCVVH 569
A + + H
Sbjct: 192 VAQPWNALPH 201
>At2g40935.1 68415.m05053 expressed protein low similarity to
PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
profile PF04749: Protein of unknown function, DUF614
Length = 190
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Frame = +2
Query: 98 LSACYDRRSNLCVNFVCSDHLICRYA-----GPSAGPCMT 202
+ AC+D + CV C ++ + A G AGPC+T
Sbjct: 51 ICACFDDMQSCCVGLFCPCYIFGKNAELLGSGTFAGPCLT 90
>At2g36100.1 68415.m04433 integral membrane family protein contains
TIGRFAM TIGR01569 : plant integral membrane protein
TIGR01569; contains Pfam PF04535 : Domain of unknown
function (DUF588)
Length = 206
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 484 AALVHLLVEDPFQFFAEQLRGHESFDALPAFHFADIGVDV 365
AA V E+ FF + L+ +D LPAF + I V V
Sbjct: 63 AASVMYTAEETLPFFTQFLQFQAGYDDLPAFQYFVIAVAV 102
>At5g22090.1 68418.m02572 expressed protein
Length = 463
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 299 SSLSPSQPFRQLESIDLSSKTWVS 228
S+ S + R+ S DLSSKTWVS
Sbjct: 31 SNTSSAPSLRRTFSADLSSKTWVS 54
>At3g15270.1 68416.m01929 squamosa promoter-binding protein-like 5
(SPL5) identical to squamosa promoter binding
protein-like 5 [Arabidopsis thaliana] GI:5931629;
contains Pfam profile PF03110: SBP domain
Length = 181
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 425 SKLFREELERVLDQQMHEGGDAPLLQRIKEMVGG 526
S L EE+E +D + +GGD +++ E V G
Sbjct: 19 SNLVEEEMENGMDGEEEDGGDEDKRKKVMERVRG 52
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,110,172
Number of Sequences: 28952
Number of extensions: 273846
Number of successful extensions: 1170
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -