Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0573
         (749 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.4  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   4.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   6.0  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 241 DRFDENGGRTPS*FNTIVSKIFC 309
           D  D NGGR P  ++  ++ I C
Sbjct: 151 DIIDRNGGRAPLTYHQFLAIIAC 173


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 499 TKQILSAIKNFYQIFP*FLSKNVPAKILMK 588
           TKQ+L      Y +F   +  NV  KIL++
Sbjct: 147 TKQLLIKFVEVYPLFVLLIVSNVVLKILVE 176


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 475 ILRFHLINTKQILSAIKNFYQIFP*FLSKNVPAKILMK*LRDNNK 609
           +LRFHL+  +++     NF   +   L   +P  +++   RD  K
Sbjct: 153 VLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVID-ERDGGK 196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,561
Number of Sequences: 336
Number of extensions: 3071
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)