Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0573
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    29   0.54 
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    29   0.94 
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   6.6  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 455  RRLVRHSD*LDNFHNYEXPLRIIIDILMKEWICLFLI 345
            + +++ +  LDNF N E  L+ I+D +  + I  FL+
Sbjct: 1117 QHIIKETVVLDNFENGEESLKFILDFMQSQLIPAFLV 1153


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
 Frame = -1

Query: 671 IHXPHSVYSFYXSHF-----KYTIACLLLSR-SYFIKILAGTFLDKNQ 546
           ++ P   YSF+ ++      +Y +   ++ R  YF+ +LAG FL+ NQ
Sbjct: 296 LNQPSDQYSFHDAYLQSYTHRYPVHRAIMCRCEYFLDMLAGPFLESNQ 343


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -3

Query: 399 AENNY*YFNEGVDLFVFDCRSFKSKTSNEFTKNF*NDSVKSTGCPATVLVESVACDKGFD 220
           +ENN  Y  E +D    +  S +   S++ +    +DS KST     +L  + +    F+
Sbjct: 48  SENNIKYLRERIDALKVESGSERESQSDKDSSKKYSDSAKSTNSDDHLLSYNRSAFDLFN 107

Query: 219 DEK 211
            EK
Sbjct: 108 SEK 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,705
Number of Sequences: 5004
Number of extensions: 55274
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)