Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0573
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11040.1 68418.m01290 expressed protein weak similarity to hy...    30   1.9  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   7.6  

>At5g11040.1 68418.m01290 expressed protein weak similarity to
           hypercellular protein [Aspergillus nidulans] GI:9309269
          Length = 1186

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/78 (29%), Positives = 37/78 (47%)
 Frame = +2

Query: 218 SSNPLSQATDSTRTVAGHPVDLTLSFQKFFVNSLLVFDLKERQSKTNKSTPSLKYQ*LFS 397
           + +PL+  + + R +  H   +T S Q    NSL         S T  + P+L +  LFS
Sbjct: 462 AGDPLAAWSAAARLLRWHYPLITPSGQNGLANSL-ANSADRLPSGTRCADPALPFVRLFS 520

Query: 398 AXFHSYENYLVSRNVAQD 451
              HS +  +V RN A++
Sbjct: 521 FPLHSSQVDIVKRNPARE 538


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = -1

Query: 374  MKEWICLFLIVVLSSRKQATNLQKIFETIVLNQLGV 267
            +++W+ LF +++++  +   +LQ  +E I L+ LGV
Sbjct: 2373 LEQWVHLFQLLLMNGNQLLWSLQLSWEHIYLSSLGV 2408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,949,064
Number of Sequences: 28952
Number of extensions: 257295
Number of successful extensions: 415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)