Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0572
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    25   0.85 
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   3.4  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   8.0  

>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 187 PKKDSLGLAWMSPLLTWVPANEKCLGSP 270
           P+K ++G+A+     T V A++  LGSP
Sbjct: 247 PQKLAIGIAFYGHAFTLVDASQHDLGSP 274


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 562 PSCSITPMQVAPARTR*RQVWSPTLPKPW 476
           PS S  P  V P     R+   PT  KPW
Sbjct: 218 PSQSPEPESVRPLSLVVRRCEEPTEEKPW 246


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 170 TTSDLFQFMLGVFFGI 123
           T +D F+   G FFGI
Sbjct: 278 TAADFFEIDRGTFFGI 293


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,970
Number of Sequences: 336
Number of extensions: 3550
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)