Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0572
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    64   3e-11
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   3.8  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   5.0  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    26   6.6  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   6.6  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   8.7  

>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 3/193 (1%)
 Frame = +3

Query: 39  VKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVD 218
           +K L     FK A   +P GG K G   +PK  S++E+ + ++ F  +L +  +IGP  D
Sbjct: 91  LKFLGFEQIFKNALTGLPMGGGKGGSDFDPKGKSDNEIRRFSQAFMRQLFR--YIGPQTD 148

Query: 219 VPAPDMG-TGEREMSWIADTYAKTVGFQDINAHACVTGKPINQGGIHGRVSATGRGVFHG 395
           VPA D+G TG   M    +       +  +     VTGK +  GG + R  ATG GV + 
Sbjct: 149 VPAGDIGVTGFVVMHMFGEYKRLRNEYSGV-----VTGKHMLTGGSNIRPEATGYGVVYY 203

Query: 396 LENFINEANYMSMIGTTPGWGGKTFIVQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIY- 572
           +++ I                GK   + G GNV  +     ++ GA    + +  G +  
Sbjct: 204 VKHMIEHRT-----KGAETLKGKRVAISGSGNVAQYAALKCIQEGAIVKSISDSKGVLIA 258

Query: 573 -NPDGINPKALED 608
              +G+ P+ + +
Sbjct: 259 KTAEGLVPEEIHE 271


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 182 TCQKRIHWAWRG 217
           TC +R+ WAWRG
Sbjct: 662 TCDRRMVWAWRG 673


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -2

Query: 596 LRVDAIRVVNGAVVLDNSDAS--GAGADEVAASVESHVTETLDDERLATPTGGCTDHAHV 423
           LR D + VV G +  D  D S   A  +E A   +   +  + DE+  T     T+HA  
Sbjct: 270 LRGD-VEVVVGDLERDGRDTSLGDASVNEAAKETDVDSSRFISDEKAVTEDAMKTEHASN 328

Query: 422 VGFVDE 405
               DE
Sbjct: 329 APLTDE 334


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +3

Query: 213 VDVPAPDMGT----GEREMSWIADTYAKTVGFQDINAHACVTGKPI 338
           +D  APDM       E     +  T +K+ G   I    C+T KPI
Sbjct: 196 IDFSAPDMSALTLVNEYPNLAVCQTLSKSFGLAGIRIGFCLTSKPI 241


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 253  SRSPVPMSGAGTSTPGPMNPF 191
            + SP P S  GTSTP P + F
Sbjct: 1003 NNSPQPASMFGTSTPAPSSAF 1023


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +1

Query: 163 LVVSPLNLP--KKDSLGLAWMSPLL 231
           L V PLNL    KD++G AW+ P+L
Sbjct: 444 LRVLPLNLELNDKDAVGRAWLLPVL 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,254
Number of Sequences: 5004
Number of extensions: 58426
Number of successful extensions: 223
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)