Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0572
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0) 199 4e-73
SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0) 80 2e-15
SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0) 80 2e-15
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 1e-14
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 31 1.00
SB_6796| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023) 28 7.0
SB_34658| Best HMM Match : SUI1 (HMM E-Value=1e-06) 28 7.0
SB_26338| Best HMM Match : NapE (HMM E-Value=1.4) 28 7.0
SB_46243| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 28 9.3
SB_16650| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
Length = 520
Score = 199 bits (486), Expect(2) = 4e-73
Identities = 93/125 (74%), Positives = 107/125 (85%)
Frame = +3
Query: 9 RSQRXVTRXEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITRRFTLELA 188
R V EV+AL+ LMTFKCA VDVPFGGAK GIKI+P ++S ELEKITRRFT+ELA
Sbjct: 135 RYSEDVDIDEVQALATLMTFKCAVVDVPFGGAKGGIKIDPSQHSVTELEKITRRFTVELA 194
Query: 189 KKGFIGPGVDVPAPDMGTGEREMSWIADTYAKTVGFQDINAHACVTGKPINQGGIHGRVS 368
KK FIGPG+DVPAPDMGTGEREMSW+AD+Y T+GF ++NA+ACVTGKPI+ GGIHGRVS
Sbjct: 195 KKHFIGPGLDVPAPDMGTGEREMSWMADSYDMTLGFGNMNAYACVTGKPIHLGGIHGRVS 254
Query: 369 ATGRG 383
ATGRG
Sbjct: 255 ATGRG 259
Score = 93.9 bits (223), Expect(2) = 4e-73
Identities = 38/56 (67%), Positives = 47/56 (83%)
Frame = +3
Query: 477 QGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEDYRIXNXTVVGFP 644
+GFGNVGLH+CRYL RAGA CIGVIE DGS++NPDGI+PK LEDY++ T+ +P
Sbjct: 258 RGFGNVGLHSCRYLHRAGAKCIGVIERDGSLWNPDGIDPKELEDYKLEKGTITNYP 313
>SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
Length = 448
Score = 79.8 bits (188), Expect = 2e-15
Identities = 59/189 (31%), Positives = 84/189 (44%), Gaps = 1/189 (0%)
Frame = +3
Query: 39 VKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVD 218
+K L K + +P GG K G +PK S+HE+ + F EL + IGP D
Sbjct: 105 LKFLGFEQVLKNSLTTLPLGGGKGGSDFDPKGKSDHEVMSFCQSFMTELQRH--IGPNTD 162
Query: 219 VPAPDMGTGEREMSWIADTYAKTVGFQDINAHACVTGKPINQGGIHGRVSATGRGVFHGL 398
VPA D+G G RE+ ++ Y + +TGK GG R ATG +GL
Sbjct: 163 VPAGDIGVGGREIGFLFGQYKRIRN----EFTGVLTGKSALWGGSLLRPEATG----YGL 214
Query: 399 ENFINEANYMSMIGTT-PGWGGKTFIVQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYN 575
F E M+ T GK V G GNV + + G + + + G++Y+
Sbjct: 215 VYFTAE-----MLATKGDSLKGKNVTVSGSGNVAQFATEKVTQLGGKVVSLSDSSGTVYD 269
Query: 576 PDGINPKAL 602
PDGI + L
Sbjct: 270 PDGITKEKL 278
>SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
Length = 486
Score = 79.8 bits (188), Expect = 2e-15
Identities = 59/189 (31%), Positives = 84/189 (44%), Gaps = 1/189 (0%)
Frame = +3
Query: 39 VKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVD 218
+K L K + +P GG K G +PK S+HE+ + F EL + IGP D
Sbjct: 143 LKFLGFEQVLKNSLTTLPLGGGKGGSDFDPKGKSDHEVMSFCQSFMTELQRH--IGPNTD 200
Query: 219 VPAPDMGTGEREMSWIADTYAKTVGFQDINAHACVTGKPINQGGIHGRVSATGRGVFHGL 398
VPA D+G G RE+ ++ Y + +TGK GG R ATG +GL
Sbjct: 201 VPAGDIGVGGREIGFLFGQYKRIRN----EFTGVLTGKSALWGGSLLRPEATG----YGL 252
Query: 399 ENFINEANYMSMIGTT-PGWGGKTFIVQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYN 575
F E M+ T GK V G GNV + + G + + + G++Y+
Sbjct: 253 VYFTAE-----MLATKGDSLKGKNVTVSGSGNVAQFATEKVTQLGGKVVSLSDSSGTVYD 307
Query: 576 PDGINPKAL 602
PDGI + L
Sbjct: 308 PDGITKEKL 316
>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 997
Score = 77.4 bits (182), Expect = 1e-14
Identities = 53/188 (28%), Positives = 85/188 (45%)
Frame = +3
Query: 39 VKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVD 218
+K L K + +P GG K G +PK +++E+ + + F LEL + IGP D
Sbjct: 432 LKFLGFEQVLKNSLTTLPMGGGKGGSNFDPKGKTDNEVMRFCQSFMLELQRH--IGPDTD 489
Query: 219 VPAPDMGTGEREMSWIADTYAKTVGFQDINAHACVTGKPINQGGIHGRVSATGRGVFHGL 398
+PA D+G G RE+ ++ Y + +TGK GG R ATG G+ +
Sbjct: 490 IPAGDIGVGGREIGFLFGQYKRIRN----EFTGVLTGKGKGWGGSLLRPEATGYGLLY-- 543
Query: 399 ENFINEANYMSMIGTTPGWGGKTFIVQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNP 578
FI E + GK + G GNV + + G + + + +G++Y+P
Sbjct: 544 --FIKEV----LAAKGDSLEGKVVTISGSGNVAQYALEKTLELGGKVVTLSDSNGTVYDP 597
Query: 579 DGINPKAL 602
GI+ L
Sbjct: 598 SGIDSAKL 605
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 31.1 bits (67), Expect = 1.00
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = -3
Query: 403 FSKPWNTPLPVAETLPWMPPWLI----GLPVTQA*ALMS*KPTVFA*VSAIQDISRSPVP 236
F+ P PV E P PP + G+P + P+VFA SA+ + +P P
Sbjct: 524 FAPSSGVPTPVTEPPPAPPPSVFAPSSGVPTPVTAPPPAPPPSVFAPSSAVPTPATAPPP 583
Query: 235 MSGAGTSTPGPMNPFLASSRVKRRVI 158
++ A S P P++ SS + I
Sbjct: 584 VA-ATLSAPPPLDSTSGSSTISSATI 608
Score = 27.9 bits (59), Expect = 9.3
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 8/127 (6%)
Frame = -3
Query: 565 EPSCSIT---PMQVAPARTR*RQVWSPTLPKPWTMNVLPPQPGVVPI--MLM*LASLMKF 401
EP+ S T P AP T TL P V PP +P +A
Sbjct: 271 EPTVSHTISNPAMAAPWVTPHPATLPVTLFTPQAAPVTPPMGAQLPETEQPQMVAPSSTV 330
Query: 400 SKPWNTPLPVAETLPWMPPWLIGLPVTQA*ALMS*KPTVFA*VSAIQDISRSPVP---MS 230
+ P P P + + PP + P T +++ P+VFA S + ++P P S
Sbjct: 331 TPPVTEPAPPSSVVA--PPPAVPTPATAPPPVVAPPPSVFASSSGVPTPVKAPPPSVFAS 388
Query: 229 GAGTSTP 209
+G TP
Sbjct: 389 SSGVPTP 395
>SB_6796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 925
Score = 29.5 bits (63), Expect = 3.0
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Frame = -2
Query: 653 LAXGKPDYXTVXDSVVLQGLRVDAIRVVNGAVVLDNSD--ASGAG-ADEVAASVESHVTE 483
LA G + + + GL D +R + + D A G G AD V + + +
Sbjct: 213 LADGVRSLTDLTPCLSIDGL-ADGVRSLTDLTPCLSMDGLAGGMGFADGVRSLLAAGADP 271
Query: 482 TLDDERLATPTGGCTDHAHVVGFVDEVLQAVEYAPARG*NSAVD 351
T+ + ATP CTD + + + +E+LQA A SA+D
Sbjct: 272 TITNNEGATPFDYCTDKSILGVYNEELLQAAAGAKPLEGKSALD 315
>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
Length = 1016
Score = 28.3 bits (60), Expect = 7.0
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 6/129 (4%)
Frame = -2
Query: 581 IRVVNGAVVLDNSDASGAGADEVAASVESHVTETLDDERLATPTGGCTDHAHV----VGF 414
+ + + V L + D D + +H+T DD L + T H+ +
Sbjct: 261 VHLTSDDVHLTSDDVHSTSGDVHLKNDNAHLTS--DDVHLTSSDVHLTGDVHLKSDHIHL 318
Query: 413 VDEVLQAVEYAPARG*NSAVDATLVNRFASDAGVSVDV--LKTDGLRISIGDPRHFSFAG 240
D+VL + RG + + + V+ + D ++ D L +D + ++ D H + G
Sbjct: 319 TDDVLLTSDDVHLRGDDVHLTSGDVHLTSDDVHLTSDDVHLTSDDVNLT-SDDVHLTSDG 377
Query: 239 THVRSGDIH 213
H+ S D+H
Sbjct: 378 VHLTSDDVH 386
>SB_34658| Best HMM Match : SUI1 (HMM E-Value=1e-06)
Length = 798
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 502 WSPTLPKPWTMNVLPPQPGVVPI 434
WSP+ KPWT+ P GV +
Sbjct: 118 WSPSFKKPWTLYRAPVAVGVTTV 140
>SB_26338| Best HMM Match : NapE (HMM E-Value=1.4)
Length = 128
Score = 28.3 bits (60), Expect = 7.0
Identities = 23/90 (25%), Positives = 38/90 (42%)
Frame = -2
Query: 332 FASDAGVSVDVLKTDGLRISIGDPRHFSFAGTHVRSGDIHARPNESFFGKFKGETTSDLF 153
+ + G+ + ++ T GL+ S G R +F +G R F + E
Sbjct: 33 YIASYGLCLQIMTTVGLQSSRGKERETAFQEASAATGS--PRDRTYFITNYTYENKDKEL 90
Query: 152 QFMLGVFFGIDLDTGLSTAERHVHARALEG 63
Q + I +DT L +AER V + L+G
Sbjct: 91 QATEKMALNI-VDTVLMSAERFVKIKKLQG 119
>SB_46243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 157 RSLVVSPLNLPKKDSLGLAWMSPLLTWVP 243
RSLVV P +P +LG A + LLT +P
Sbjct: 285 RSLVVEPGTVPSYSNLGYALLGRLLTEMP 313
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +1
Query: 265 SPILMRRPSVFKTSTLTPASLANL 336
SP++++ P+VFK + + P SL+ +
Sbjct: 507 SPVILKNPTVFKKTCILPMSLSKI 530
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -3
Query: 583 PSGL*MEPSCSITPMQVAPART--R*RQVWSPTLPKPWTMNVLP--PQPGVVPI 434
PS ++PS S TP++ +P+ T + +P P P T + P P P PI
Sbjct: 1301 PSTTPIKPSPSTTPIKPSPSTTPIKPSPSTTPIKPSPSTTSTTPIKPSPSTTPI 1354
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = -2
Query: 449 GGCTDHAHVVGFVDEVLQAVEYAPARG*NSAVDATLVNRFASDAGVSVDVLKTDGLRISI 270
G C V F DE ++++ ++ +G N+A+ V + G +V + GL IS
Sbjct: 156 GRCALMKRVAEFADEAVESLHFSLGKGHNTALGLKDVQMLTAGPG-NVQDARQPGLVISW 214
Query: 269 GDPRHFSFAGTHVRS 225
AGT V S
Sbjct: 215 QIGCGIDLAGTRVAS 229
>SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +1
Query: 202 LGLAWMSPLLTWVPANEKCLGSPILMRRPSVFKTSTLTPASLANLLTRVASTAEFQPR 375
LG + +S L+ +PA+ LGS +L R V T P+S + L R+ PR
Sbjct: 895 LGSSSLSRLILVIPAHRPYLGSSLLPRLILVITAHTCYPSS--SSLPRIILATSAHPR 950
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 117 KINPKEYSEHELEKITRRFTLELAKK 194
K+ PKE+ E ++EK+ R T +++
Sbjct: 464 KVEPKEFDEDDVEKVVERLTRNASQR 489
>SB_16650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 268 AIQDISRSPVPMSGAGTSTPGPMNPFLASSR 176
++ D+ + P +SG S GP P LAS++
Sbjct: 190 SLADLLQEPSKLSGQNISQAGPQQPLLASNQ 220
>SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 958
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +1
Query: 217 MSPLLTWVPANEKCLGSPILMRRPSVFKTSTLTPASLANL--LTRVASTAEFQPRAGAYS 390
+SPLL V C+G R + F +T+T SL L L E+ PR + S
Sbjct: 499 LSPLLAVVAGALMCVGPKCTRRLYAAFFLTTITALSLMVLAGLVNAGHWLEYLPRNDSIS 558
Query: 391 T 393
T
Sbjct: 559 T 559
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,015,075
Number of Sequences: 59808
Number of extensions: 472764
Number of successful extensions: 1363
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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