Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0568
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P43254 Cluster: E3 ubiquitin-protein ligase COP1; n=28;...    36   0.81 
UniRef50_A7TDN2 Cluster: Putative uncharacterized protein; n=1; ...    33   5.7  
UniRef50_Q9USW3 Cluster: Glycosyl hydrolase family 16; n=1; Schi...    33   7.5  
UniRef50_P35187 Cluster: ATP-dependent helicase SGS1; n=2; Sacch...    33   7.5  
UniRef50_Q755I2 Cluster: AFL159Wp; n=1; Eremothecium gossypii|Re...    33   9.9  

>UniRef50_P43254 Cluster: E3 ubiquitin-protein ligase COP1; n=28;
           Eukaryota|Rep: E3 ubiquitin-protein ligase COP1 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 675

 Score = 36.3 bits (80), Expect = 0.81
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -2

Query: 257 YIKILTKLRESDLHEI*SKLQYVR--FNTISTRTVQLYRVPRRSDVTVATLAQAVTSRHR 84
           ++  L K +  +L+E+ + LQY++   N +    + LYR   R  V +  L    ++R+ 
Sbjct: 170 FLHCLRKQKVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNA 229

Query: 83  WP 78
           WP
Sbjct: 230 WP 231


>UniRef50_A7TDN2 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 1332

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 343 DLKFVSPRVASAEDECFRTSDKLYGDKKL 257
           D+ ++SP + SA ++C +   KLY DKKL
Sbjct: 654 DIIYISPEMVSASEQCKKAIKKLYVDKKL 682


>UniRef50_Q9USW3 Cluster: Glycosyl hydrolase family 16; n=1;
           Schizosaccharomyces pombe|Rep: Glycosyl hydrolase family
           16 - Schizosaccharomyces pombe (Fission yeast)
          Length = 419

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 422 STGRPPVRFQSSLYIPHGVTTLFFFFLYFEISSYPQF 532
           S+GRP +R QS+ Y  HG+  L    L +   ++P F
Sbjct: 189 SSGRPSIRLQSTQYFEHGLFILDLIHLPYGCGTWPAF 225


>UniRef50_P35187 Cluster: ATP-dependent helicase SGS1; n=2;
           Saccharomyces cerevisiae|Rep: ATP-dependent helicase
           SGS1 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 1447

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 343 DLKFVSPRVASAEDECFRTSDKLYGDKKL 257
           DL ++SP + SA ++C R   +LY D KL
Sbjct: 774 DLVYISPEMISASEQCKRAISRLYADGKL 802


>UniRef50_Q755I2 Cluster: AFL159Wp; n=1; Eremothecium gossypii|Rep:
           AFL159Wp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 1150

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 343 DLKFVSPRVASAEDECFRTSDKLYGDKKL 257
           DL ++SP + SA  +C     KLY DKKL
Sbjct: 487 DLVYISPEMVSASVQCRNAIQKLYRDKKL 515


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 774,643,628
Number of Sequences: 1657284
Number of extensions: 15640206
Number of successful extensions: 33130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33119
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)