BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0568 (750 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 33 0.043 SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 6.6 SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 26 6.6 >SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces pombe|chr 2|||Manual Length = 419 Score = 33.1 bits (72), Expect = 0.043 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +2 Query: 422 STGRPPVRFQSSLYIPHGVTTLFFFFLYFEISSYPQF 532 S+GRP +R QS+ Y HG+ L L + ++P F Sbjct: 189 SSGRPSIRLQSTQYFEHGLFILDLIHLPYGCGTWPAF 225 >SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1082 Score = 25.8 bits (54), Expect = 6.6 Identities = 20/93 (21%), Positives = 45/93 (48%) Frame = -1 Query: 336 NSCPLVLPAPRTSAFEQATNFTEIKSLY*NTYKTTRERLA*DLVEVTICEIQYNINTYSA 157 +S +V+P +S +T+FT+ SL ++ + + E +++ + +++T S Sbjct: 485 SSSLVVIPPVNSSLVTSSTSFTKFSSL--SSSQLSTENFTSASSSLSLTNAKSSLSTPST 542 Query: 156 TIPRAATQ*RHGRNTGASRDVTAPMAGRQLPLT 58 TIP + + T +S +++P+ L T Sbjct: 543 TIPTSNSS--VSLQTSSSLIISSPIISSSLTAT 573 >SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase Ade3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1323 Score = 25.8 bits (54), Expect = 6.6 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = -2 Query: 323 SCCQRRGRVLSNKRQTLRR*KAYIKILTKLRESDLHEI*SKLQY 192 +C R G+VLS + QT+ ++ KI+ K S LH I + Y Sbjct: 969 TCVHRIGKVLSGQAQTISFSRSG-KIIFKSTRSKLHGIWHETSY 1011 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,177,649 Number of Sequences: 5004 Number of extensions: 65869 Number of successful extensions: 154 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 151 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 154 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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