Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0568
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    33   0.043
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   6.6  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    26   6.6  

>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 33.1 bits (72), Expect = 0.043
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 422 STGRPPVRFQSSLYIPHGVTTLFFFFLYFEISSYPQF 532
           S+GRP +R QS+ Y  HG+  L    L +   ++P F
Sbjct: 189 SSGRPSIRLQSTQYFEHGLFILDLIHLPYGCGTWPAF 225


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 20/93 (21%), Positives = 45/93 (48%)
 Frame = -1

Query: 336 NSCPLVLPAPRTSAFEQATNFTEIKSLY*NTYKTTRERLA*DLVEVTICEIQYNINTYSA 157
           +S  +V+P   +S    +T+FT+  SL  ++ + + E        +++   + +++T S 
Sbjct: 485 SSSLVVIPPVNSSLVTSSTSFTKFSSL--SSSQLSTENFTSASSSLSLTNAKSSLSTPST 542

Query: 156 TIPRAATQ*RHGRNTGASRDVTAPMAGRQLPLT 58
           TIP + +       T +S  +++P+    L  T
Sbjct: 543 TIPTSNSS--VSLQTSSSLIISSPIISSSLTAT 573


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 323  SCCQRRGRVLSNKRQTLRR*KAYIKILTKLRESDLHEI*SKLQY 192
            +C  R G+VLS + QT+   ++  KI+ K   S LH I  +  Y
Sbjct: 969  TCVHRIGKVLSGQAQTISFSRSG-KIIFKSTRSKLHGIWHETSY 1011


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,649
Number of Sequences: 5004
Number of extensions: 65869
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)