Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0568
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060     30   2.3  
09_06_0343 - 22415525-22415833,22415999-22416134,22416593-224166...    28   6.9  

>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
          Length = 794

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -3

Query: 307 EDECFRTSDKLYGDKKLILKYLQNYARA-TCMRFSRSYNM*DSIQYQ 170
           +DE   T + L+GD++ +LKY + YA+A T  R SR      S+Q +
Sbjct: 338 DDEVANTENNLHGDERNLLKYCE-YAKAPTKRRSSRPQRNAASVQIE 383


>09_06_0343 -
           22415525-22415833,22415999-22416134,22416593-22416697,
           22417696-22418291
          Length = 381

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 187 DSIQYQHVQCNYTACRDAVTSRSQHWRKP*RHGTDGRAP 71
           +S+Q +HV+ +  A R AVT      R P  +GT G  P
Sbjct: 300 ESLQREHVEEHKAALRRAVTLSVPDARSPSAYGTFGEQP 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,194,762
Number of Sequences: 37544
Number of extensions: 456208
Number of successful extensions: 962
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)