Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0568
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14898| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_48457| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  

>SB_14898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 37/140 (26%), Positives = 56/140 (40%)
 Frame = +3

Query: 15  LHFSPDYYPQTLSRQSKVIGARPSVP*RHGLRQCCDRDVTASRHAV*LHCTC*YCIESHI 194
           +H S    P  LSRQ++V    P V   +GLR    R  + SR  +    T     ES  
Sbjct: 451 VHVSDSDLPSGLSRQTEVSPLSPKVDPSNGLRPTVQRSKSFSRTKI-ERVTTTMGQESGF 509

Query: 195 L*LRLNLMQVALA*FCKYFNISFLSP*SLSLVRKHSSSALATRGDTNFKSHDFFFLLKEI 374
               L+     L  F KY   + L   +   +R   +S  + +    F S+  F +L   
Sbjct: 510 GEFMLSFSDKELLEFYKYEIDAQLFVLN-EAMRGLFNSVESGQPPKTFVSNSKFVVLSAH 568

Query: 375 *FYLFVDTNRMRVHASRLGV 434
            F    DT   ++H  +LG+
Sbjct: 569 KFIYIGDTLHRKIHHDKLGI 588


>SB_48457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +3

Query: 591 QSTVDPMSRSSTCNLFNFHPPH*QLVITNVECTPHFNSNSGSRS 722
           +++    SR+   ++  F+PP+ + V TN+E    + ++SG+R+
Sbjct: 59  RTSTQRQSRNRQRDVIWFNPPYSKNVSTNIEFNRQYRNSSGNRT 102


>SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 382  ICLSTQIV*GYTPVDWASACKVSVLVVHSTRCDHIV 489
            + ++T  V    P+  A AC V VLVV    C H+V
Sbjct: 893  VAMATGSVSVALPIGIAGACAVLVLVVFGLTCRHVV 928


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,404,024
Number of Sequences: 59808
Number of extensions: 525480
Number of successful extensions: 1319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)