Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0568
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92832-4|CAB07373.1|  488|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z81568-1|CAB04594.1|  681|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z92832-4|CAB07373.1|  488|Caenorhabditis elegans Hypothetical
           protein F31D4.5 protein.
          Length = 488

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 2/137 (1%)
 Frame = -2

Query: 494 RKTMWSHRVECTTRTETLQADAQSTGVYPHTICVDKQIXXXXXXXXXXXXXXXXXVPSCC 315
           +KT+   ++   ++TE LQA+ +S  +    I   +Q+                     C
Sbjct: 282 KKTLEQEKMSLNSKTEHLQANMESLNIEKEKI--HEQLQEIVREREKVLIDNQNLSTDKC 339

Query: 314 QRRGRV--LSNKRQTLRR*KAYIKILTKLRESDLHEI*SKLQYVRFNTISTRTVQLYRVP 141
           Q   R+  +   R  +   K  I+ L K+ E    ++  + QY    T S     L  V 
Sbjct: 340 QLNNRLMEIETSRNCIMTEKEKIENLLKMNEQKTQDLEKERQYYTMKT-SELMDHLKEVS 398

Query: 140 RRSDVTVATLAQAVTSR 90
            + D+T + L + + +R
Sbjct: 399 EQRDLTESELKEQMMAR 415


>Z81568-1|CAB04594.1|  681|Caenorhabditis elegans Hypothetical
           protein K08E3.1 protein.
          Length = 681

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 250 KYLQNYARATCMRFSRSYNM*DSIQYQHVQC 158
           +++  Y +A+C   + SYN  D+   +HV C
Sbjct: 563 EFMSQYCQASCNTCTPSYNTTDACMDRHVNC 593


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,982,925
Number of Sequences: 27780
Number of extensions: 386448
Number of successful extensions: 925
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)