Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0568
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    27   0.14 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   7.1  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   9.3  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   9.3  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   9.3  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   9.3  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 548 KLHNLKT-GGNWKFRNIKKRKTMWSHRVECTTR 453
           ++H ++T GGN K+R ++     +S   ECTTR
Sbjct: 42  RIHTVRTRGGNKKYRALRLDTGNFSWGSECTTR 74


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 129 RHGRNTGASRDVTAPMAGRQLPLTVSKVFEGN 34
           RHGR    S D+ A       P+    V EG+
Sbjct: 85  RHGRRQSRSMDLNAHREQMSWPVKKEAVVEGD 116


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -2

Query: 656 VGGVEVEKITSARTTHWIDRRLLTARATDMPY*L*IKLHNLKTGGNWKFRNIKKRKT 486
           + G  +   T A+T      RL +ARA   P+     LH +      K R + KR T
Sbjct: 242 LSGDRINGFTVAQTISRNGVRLSSARAFITPFENRSNLHVIVNATVTKVRTLNKRAT 298


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 534 KNWG*LEISKYKKKKNNVVTPCGMYNED 451
           K W  +E    +   +N +T C M N D
Sbjct: 38  KGWKEVEYEVVRDAYDNCITVCNMENVD 65


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 740 YNKIPERSRSTITVKM 693
           +NKIPE + +T T K+
Sbjct: 70  WNKIPEGANTTSTTKI 85


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 740 YNKIPERSRSTITVKM 693
           +NKIPE + +T T K+
Sbjct: 118 WNKIPEGANTTSTTKI 133


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 740 YNKIPERSRSTITVKM 693
           +NKIPE + +T T K+
Sbjct: 118 WNKIPEGANTTSTTKI 133


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 740 YNKIPERSRSTITVKM 693
           +NKIPE + +T T K+
Sbjct: 118 WNKIPEGANTTSTTKI 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,277
Number of Sequences: 438
Number of extensions: 5772
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)