Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0568
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene...    36   0.022
At3g09710.1 68416.m01150 calmodulin-binding family protein low s...    29   3.3  
At1g61780.1 68414.m06967 postsynaptic protein-related similar to...    29   3.3  

>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
           repressor; identical to COP1 regulatory protein/FUSCA
           protein FUS1 GI:402685 SP:P43254
          Length = 675

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -2

Query: 257 YIKILTKLRESDLHEI*SKLQYVR--FNTISTRTVQLYRVPRRSDVTVATLAQAVTSRHR 84
           ++  L K +  +L+E+ + LQY++   N +    + LYR   R  V +  L    ++R+ 
Sbjct: 170 FLHCLRKQKVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNA 229

Query: 83  WP 78
           WP
Sbjct: 230 WP 231


>At3g09710.1 68416.m01150 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 454

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -2

Query: 548 KLHNLKTGGNWKFRNIKKRKTM--WSHRVECTTRTETLQADA 429
           +L  LK GGNW + N  K +      H+ E T R E   A A
Sbjct: 191 ELGGLKNGGNWNYSNQSKEQVEAGMLHKYEATMRRERALAYA 232


>At1g61780.1 68414.m06967 postsynaptic protein-related similar to
           postsynaptic protein CRIPT GI:3098551 from [Rattus
           norvegicus]
          Length = 98

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
 Frame = -2

Query: 539 NLKTGGNWKFRNIK--KRKTMWSHRVECTTRTETLQADAQSTGVYPHTICVDKQI 381
           N+  GG  K    K   +K  WS    CTT+    +      G Y HT    K +
Sbjct: 25  NVTEGGGRKINENKLLSKKNRWSPYSTCTTKCMICKQQVHQDGKYCHTCAYSKGV 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,730,238
Number of Sequences: 28952
Number of extensions: 351444
Number of successful extensions: 735
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)