Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0567
         (400 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   0.84 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   3.4  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   3.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   3.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   3.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   3.4  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    21   4.5  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 121 FNGRLIIATTENSIVFLKLWNT 186
           F+G L+ ATT+  + +   W+T
Sbjct: 14  FSGALVSATTDKVVCYWGTWST 35


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 121 IPFTVKIITTTLYY 80
           + FT+KI   TLYY
Sbjct: 201 VTFTIKIRRRTLYY 214


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 121 IPFTVKIITTTLYY 80
           + FT+KI   TLYY
Sbjct: 201 VTFTIKIRRRTLYY 214


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 121 IPFTVKIITTTLYY 80
           + FT+KI   TLYY
Sbjct: 201 VTFTIKIRRRTLYY 214


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 121 IPFTVKIITTTLYY 80
           + FT+KI   TLYY
Sbjct: 201 VTFTIKIRRRTLYY 214


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 121 IPFTVKIITTTLYY 80
           + FT+KI   TLYY
Sbjct: 201 VTFTIKIRRRTLYY 214


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 170 RXTIEFSVVAIINLPLNSVYRQNNYYYAI 84
           R + +    A   + +NSV   NN +YA+
Sbjct: 133 RFSNDVIATAAFGIRVNSVQEPNNEFYAM 161


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,800
Number of Sequences: 336
Number of extensions: 1486
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)