Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0567
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   1.4  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   3.3  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   4.3  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    24   10.0 

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 88  LYYLKLWQYDEVALKDTFLAYFET*P 11
           LY LKLW+     L++ +L YF T P
Sbjct: 446 LYDLKLWKSLRYKLQELYLGYFITQP 471


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 175 LWNT*INIRECSVSRHSRCQSR 240
           +W + +    CS+S HSRC  R
Sbjct: 718 VWGSELRCFHCSISCHSRCLKR 739


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 129 PIEFRLPSK*LLLRY 85
           P+EF+LP K L LRY
Sbjct: 209 PLEFQLPEKILYLRY 223


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 332 FPRRKLMGVAMTHASNELRKNARQAT 255
           F +++++GV+   + +E+RK  RQ T
Sbjct: 6   FSQKQILGVSKDASESEIRKAYRQLT 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,406
Number of Sequences: 5004
Number of extensions: 23855
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)