Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0567
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112...    27   5.5  
02_02_0431 - 10152228-10152352,10152688-10152919,10153602-101538...    27   7.2  

>05_06_0212 +
           26410330-26410419,26410562-26410846,26411005-26411208,
           26411636-26411692,26411859-26412926
          Length = 567

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -3

Query: 380 VYRLXNFFKXKXITYCFPRRKLMGVAMTHASNELRKNARQATAWPCLRD*HRLWRETEHS 201
           V+R  +  K   +T   P  +    AM   S +L++N+R+++A P       +  ETE S
Sbjct: 247 VWRPISHPKRAAVTDAKPHTRKASYAMETESGKLKRNSRRSSAAPVESSQTNIAMETEKS 306


>02_02_0431 -
           10152228-10152352,10152688-10152919,10153602-10153808,
           10153915-10154034,10154114-10154260,10155080-10155147,
           10155502-10155667,10156765-10156914,10157219-10157335,
           10158177-10158281,10159050-10159147,10159594-10159763,
           10161489-10161511,10161927-10162006,10162191-10162259,
           10163198-10163442,10163614-10163810
          Length = 772

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 226 RCQSRRHGQAVACRAFFRSSFEACVIATPI 315
           RC  RRH +A+A RA   S   +  +A P+
Sbjct: 21  RCAPRRHRRALAPRAASSSPSPSTAVAAPV 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,093,766
Number of Sequences: 37544
Number of extensions: 141794
Number of successful extensions: 239
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)