Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0567
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   1.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   3.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   3.9  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 158 EFSVVAIINLPLNSVYRQNNYYY 90
           EF+ + +I +P N V+R +   Y
Sbjct: 73  EFAGIRVIRVPYNRVWRPDTILY 95


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 202 ECSVSRHSRCQSRRHGQAVACRAFFRSSFEACVI 303
           EC   R    Q +R+G  + C    RSS ++C +
Sbjct: 355 ECGEFRSVVVQ-KRNGSMIECNISPRSSADSCQV 387


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 397 HVKIIMYTGCXIFLSXKXLH 338
           H+   MYT C I+L+   L+
Sbjct: 849 HIGFTMYTTCVIWLAFVPLY 868


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,476
Number of Sequences: 438
Number of extensions: 1770
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)