Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0567
         (400 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01260.2 68418.m00035 glycoside hydrolase starch-binding doma...    30   0.65 
At5g01260.1 68418.m00034 glycoside hydrolase starch-binding doma...    30   0.65 
At2g40850.1 68415.m05043 phosphatidylinositol 3- and 4-kinase fa...    27   4.6  
At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 fam...    27   6.1  

>At5g01260.2 68418.m00035 glycoside hydrolase starch-binding
           domain-containing protein low similarity to SP|P31797
           Cyclomaltodextrin glucanotransferase precursor (EC
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
           {Bacillus stearothermophilus}; contains Pfam profile
           PF00686: Starch binding domain
          Length = 385

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 8   MRLRFKIGKECIFQSHFIIL 67
           +R+RF++ KEC+F  HF I+
Sbjct: 87  VRVRFQLRKECVFGEHFFIV 106


>At5g01260.1 68418.m00034 glycoside hydrolase starch-binding
           domain-containing protein low similarity to SP|P31797
           Cyclomaltodextrin glucanotransferase precursor (EC
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
           {Bacillus stearothermophilus}; contains Pfam profile
           PF00686: Starch binding domain
          Length = 306

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 8   MRLRFKIGKECIFQSHFIIL 67
           +R+RF++ KEC+F  HF I+
Sbjct: 87  VRVRFQLRKECVFGEHFFIV 106


>At2g40850.1 68415.m05043 phosphatidylinositol 3- and 4-kinase
           family protein contains Pfam profile PF00454:
           Phosphatidylinositol 3- and 4-kinase
          Length = 561

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 298 HMLQMSCEKMRGKRRLGRAFVIDIDYGVKL 209
           +ML   C+K     RLG A ++ ID+G+ L
Sbjct: 274 NMLVKRCDKKEAYNRLGTAELVPIDHGLCL 303


>At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 family
           protein low similarity to xenotropic and polytropic
           murine leukemia virus receptor [Mustela vison]
           GI:6093316; contains Pfam profile PF03124: EXS family
          Length = 424

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 173 FRXTIEFSVVAIINLPLNSVYRQNNYY-----YAILFKVMAI**SGF 48
           ++  + FS V I+ +P N  Y  + YY     + ILF V A+  S F
Sbjct: 130 WKVVLYFSAVIILIIPFNIFYMSSRYYLLWTFWRILFPVHAVTFSDF 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,538,525
Number of Sequences: 28952
Number of extensions: 120147
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)