Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0566
(644 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.) 320 6e-88
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77) 33 0.20
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063) 29 3.2
SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22) 29 4.3
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4) 28 7.5
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45) 28 7.5
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15) 28 7.5
SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26) 27 9.9
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30) 27 9.9
>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 320 bits (786), Expect = 6e-88
Identities = 152/173 (87%), Positives = 164/173 (94%)
Frame = +3
Query: 30 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 209
V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKD
Sbjct: 5 VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64
Query: 210 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 389
P+RLFEGNALLRRLVRIGVLDE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 65 PRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHAR 124
Query: 390 ILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 548
+LIRQRHIRVRKQ+VN+PSF+VRLDS KHIDFSL SP+GGGRPGRVKRKN++K
Sbjct: 125 VLIRQRHIRVRKQLVNVPSFVVRLDSQKHIDFSLNSPYGGGRPGRVKRKNMKK 177
>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/123 (24%), Positives = 61/123 (49%)
Frame = +3
Query: 87 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 266
+E+K++ +Y ++ + + + I+ A ++ L+ KDP R+ +L +L +G+
Sbjct: 28 REVKVLRKYHIQKREDYTKYNKLSGLIKSLANKIKDLDPKDPYRVEATEQILEKLHNMGL 87
Query: 267 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 446
+ K+ L + F RRL + +A+ + A I Q H+RV +V+ P+
Sbjct: 88 ISTKK-NLGQCNKVNASSFCRRRLPVVMVNLKMAQVVKDAVKYIEQGHVRVGPEVIMDPA 146
Query: 447 FIV 455
F+V
Sbjct: 147 FLV 149
>SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77)
Length = 738
Score = 33.1 bits (72), Expect = 0.20
Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Frame = +3
Query: 162 RIRKAARELLTLEEKDPKRLFEGNALLRRLVRI-GVLDEKQMKLDYVLGLKIEDFLERRL 338
R R+ RE L +D +R +RRL +I L +++++ +L +I L +R+
Sbjct: 246 RKRRRQRERLLRRRRDRQRRLRQRRRMRRLRKIIDNLRKREIRRKVILRRRINR-LNKRM 304
Query: 339 QTQVF----KAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG 506
+ + K G A+ ++ R+ I +R I + ++ RLD + LK+
Sbjct: 305 RIYINRMRRKHGKARRQYNIRVRILRRQITILRKNKTAKRLRQRLDKVMNHVRRLKNRLA 364
Query: 507 GGRPGRVKRKNLRK 548
R R++RK L +
Sbjct: 365 RQRRERLRRKRLNR 378
>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 57 RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 215
+RP K L Q+ +G+YG KR+ V AARE+L +E PK
Sbjct: 57 KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109
>SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)
Length = 499
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = -3
Query: 321 SPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTISWGPSPRG*GAHEQPYGYERACI*R 142
SP+ +D H VSSV LQ DD H L+ ++ PS +++ + + +
Sbjct: 219 SPEVADFFHELVSSVSDISLQLHKDDTT-HMLKDFAFHPSE----SNKTEFITKATERLK 273
Query: 141 AILHACCGDRTLR 103
++H+C G + +R
Sbjct: 274 TLVHSCSGKKAIR 286
>SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)
Length = 398
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Frame = +3
Query: 165 IRKAARELLTLEEKDPKRL-------FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDF 323
+ K R T EKDPKR+ + G AL ++ +G+ E + Y LGL +E+
Sbjct: 100 VGKWIRTQQTYYEKDPKRVYYLSLEYYMGRALSNTMINLGIQGECD-EAAYQLGLDMEEL 158
Query: 324 LERRLQTQVFKAGLAK 371
E + GL +
Sbjct: 159 EEMEEDAGLGNGGLGR 174
>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2557
Score = 28.7 bits (61), Expect = 4.3
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Frame = +3
Query: 117 LRNKREVWRVKYTLARIRKAARELLTLE--EKDPKR--LFEGNA--LLRRLVRIGVL--D 272
L N E W + AR+R+ +L+ L+ +KD KR + E A L+ R + D
Sbjct: 1180 LTNTAEAWTQEQREARLRELKDKLVALDPADKDQKRSVMLEAAAIKLVSRKAHLAKSRED 1239
Query: 273 EKQMKLDYVLGLKIEDF-LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ--VVNIP 443
++ D V+ I D E+ +++ A + + I +++ HI R Q + N+
Sbjct: 1240 GSEVPRDEVMISLIADLQQEQDKESEGVLASMQEKDKDGLIALQKEHIAARAQDTLANVR 1299
Query: 444 SFIVRLDSGKHID 482
+ + R + G D
Sbjct: 1300 AVLTRGEEGVAAD 1312
>SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +3
Query: 171 KAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKL 290
++A ELL EK+ KRL E NA L R V++ +++KL
Sbjct: 24 RSAAELLDKSEKERKRLSEKNAQLTINERDLVMELERLKL 63
>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1155
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +3
Query: 291 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI-PSFIVRLDS 467
D + G++ D+ L K +A L QR + V K VV F+++ +
Sbjct: 128 DTLRGVQKHDYARLNLDAPALKNPIALPFMRRHQLTPQRIMGVVKTVVQSNEQFVLQGNF 187
Query: 468 GKHIDFSLKSPFGGGRPGRVKRKN 539
H+ P+GGG+ G+ K+ +
Sbjct: 188 HLHV-VRTHMPYGGGKRGKSKKNS 210
>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
Length = 259
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 438 CSQLACGHEYAFAGSKFWHDGWTSP 364
C++LA Y++ G +FW + W+ P
Sbjct: 72 CARLAEQKNYSYFGVQFWGECWSGP 96
>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
Length = 454
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 72 KARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 215
K L Q+ +G+YG KR+ V AARE+L +E PK
Sbjct: 2 KELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 49
>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
Length = 884
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 249 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 395
L++I D+K M+ +Y+LGL +E +R +++ + K H R L
Sbjct: 806 LLQILTQDDKNMEAEYLLGLILERQGKRLEAMKLYMDVIRKDTSHVRAL 854
>SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)
Length = 600
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 440 DVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEVLN 312
D+ + A MP P +G+ D + Q +FE +++ T VL+
Sbjct: 381 DLEKVKAICEMPQPVDIAGVQDLIAQEAFEKIKMMITKAPVLH 423
>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
Length = 1405
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +3
Query: 222 FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIR 401
F G A+ + G+L + LD ++G K ED+ +RRL+ ++ K A++ ++
Sbjct: 1139 FRGEAITFKATTAGILATLEHCLD-LMG-KREDYWQRRLEREIEKRKKAEASVKESVVSA 1196
Query: 402 QRH 410
++H
Sbjct: 1197 KKH 1199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,882,283
Number of Sequences: 59808
Number of extensions: 371639
Number of successful extensions: 969
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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