Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0565
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    33   0.043
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    28   1.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    28   1.2  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    28   1.6  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    27   2.2  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   5.0  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   5.0  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   6.6  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    26   6.6  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 33.1 bits (72), Expect = 0.043
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
 Frame = +1

Query: 130 AMPVAEEKDVVPAQPILEVAPKIDDSXXXXXXXXXXXXXXXXXXXXSN--DEVPAIPEAX 303
           A+PV  E   VP  P+  VAP++                       +    EVP++P+  
Sbjct: 564 AVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRP 623

Query: 304 KDDIAPEDSDIAKPETVPXVKTEXKVPE 387
              + PE   + +P   P V     VP+
Sbjct: 624 AVPVVPEAPSVPQPPAAPVVPEVPSVPQ 651



 Score = 32.3 bits (70), Expect = 0.076
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
 Frame = +1

Query: 136 PVAEEKDVVPAQPILEVAPKIDDSXXXXXXXXXXXXXXXXXXXXSN--DEVPAIPEAXKD 309
           PV  E   VP  P+  VAP++                       +    EVP++P+    
Sbjct: 596 PVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAV 655

Query: 310 DIAPEDSDIAKPETVPXVKTEXKVPE 387
            + PE   + +P   P V     VP+
Sbjct: 656 PVVPEAPSVPQPPAAPVVPEVPSVPQ 681



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 2/88 (2%)
 Frame = +1

Query: 130 AMPVAEEKDVVPAQPILEVAPKIDDSXXXXXXXXXXXXXXXXXXXXSN--DEVPAIPEAX 303
           A PVA E    P +P   V P+                        +    EVP++P+  
Sbjct: 534 AAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPP 593

Query: 304 KDDIAPEDSDIAKPETVPXVKTEXKVPE 387
              + PE   + +P   P       VP+
Sbjct: 594 VAPVVPEAPSVPQPPVAPVAPEVPSVPQ 621



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
 Frame = +1

Query: 136 PVAEEKDVVPAQPILEVAPKIDD--SXXXXXXXXXXXXXXXXXXXXSNDEVPAIPEAXKD 309
           PVA E   VP +P + V P+                             E P++P+    
Sbjct: 611 PVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAA 670

Query: 310 DIAPEDSDIAKPETVPXVKTEXKVPE 387
            + PE   + +P  VP V    ++ E
Sbjct: 671 PVVPEVPSVPQPPAVPVVPEAGQLNE 696


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 434 IKVEEPAAQPEDSKTEXQATVAE-ISKEEXPSATDAEGSADSXAIIXNMVXKID 592
           I VE    QPEDSK    + ++E +S +E  +    + S D  A + +++  +D
Sbjct: 525 IFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLD 578


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 378  SPGSKIIXRFPMLKQNLLILKWKNQLLSLKIQK 476
            +P  KI  R+P+ K+N+ I  W  QL SLK+ +
Sbjct: 1216 TPIPKIDIRYPIYKENVTIHTWM-QLFSLKLME 1247


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 365 KPXXKSRKQNHPEIPDAEAKSADI-KVEEPAAQPEDSKTEXQATVAEISKEEXP 523
           KP   + +Q   + P+ +  +    KVEEP+ + ++   + + TV +  +E+ P
Sbjct: 437 KPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTP 490


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 327 VFWGYIVLXGLWYSGYLVVTNW 262
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +2

Query: 386  KQNHPEIPDAEAKSADIKVEEPAAQPEDSKTEXQAT 493
            KQ HP   D   K   I VEE A    DS +E + T
Sbjct: 941  KQLHPVEWDCFVKDTKILVEENAPYENDSVSEKEGT 976


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +2

Query: 284 PLYQRPXRTI*PQKTPISRNRKPFLX*KPXXKSRKQNHPEIPDAEAKSADIKVE--EPAA 457
           P   RP        + +S+ +K         KS KQN     + +A S  I     +  A
Sbjct: 197 PEVSRPSTDTIGVSSALSKKKKKRNRKNQKKKSTKQNIEATTENDALSESISTPDIQKVA 256

Query: 458 QPEDSKTEXQATVAEISKEE 517
           Q ED   E Q TVA+  +EE
Sbjct: 257 QSEDVDAE-QDTVADSKEEE 275


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 414 LKQNLLILKWKNQLLSLKIQKLXYKLPSL-KFQKK 515
           L++NLL+       + LKI+    KLPSL KF+K+
Sbjct: 415 LQENLLVSSTSVPDVPLKIESTVGKLPSLPKFKKR 449


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 444 KNQLLSLKIQKLXYKLPSLKFQKKXNL 524
           KN LLS KI +  Y+  S+++QK  N+
Sbjct: 40  KNGLLSPKITQRFYQNSSIQYQKDKNI 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,916
Number of Sequences: 5004
Number of extensions: 26627
Number of successful extensions: 93
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)