Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0565
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0489 + 10869482-10871218                                         30   1.7  
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444...    30   2.3  
04_03_0041 + 10046063-10046170,10046284-10046742                       29   3.0  
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848...    29   3.0  
09_04_0559 + 18516732-18516746,18516893-18517330                       29   3.9  
12_01_0419 - 3316866-3318172,3318249-3318360                           28   9.1  

>02_02_0489 + 10869482-10871218
          Length = 578

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = +2

Query: 323 KTPISRNRKPFLX*KPXXKSRKQNHPEIPDAEAKSADIKVEEPAAQPEDSKTEXQATVAE 502
           +T +  +++  L   P    +K +H +  D EAKS   KV    A  +D  T   +   +
Sbjct: 356 ETKVGSSKEAALAASPTKGKKKGSHKDKLDEEAKSGTAKVTSTIATDDDDGTLGGSKREK 415

Query: 503 ISKEEXPSAT 532
             KEE    T
Sbjct: 416 AGKEELDGDT 425


>01_06_1519 +
           37942389-37943702,37944142-37944266,37944358-37944499,
           37944602-37944848,37946139-37946196,37947629-37947913,
           37947988-37948120
          Length = 767

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +2

Query: 401 EIPDAEAKSADIKVEEP---AAQPEDSKTEXQATVAEISKEEXPSATDAE 541
           E P AEA S + K EEP   AA  E +K E +A  A  ++E  P+  + E
Sbjct: 168 EEPKAEASSEEAKTEEPKAEAAADEPAKEESKAEAAP-AEEAKPAEPEPE 216


>04_03_0041 + 10046063-10046170,10046284-10046742
          Length = 188

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 286 AIPEAXKDDIAPE-DSDIAKPETVPXVKTEXKVPEAK 393
           A P+  KD   P+ D+  AKP+  P   T+ K PE K
Sbjct: 118 AAPKPAKDAAKPKKDAAAAKPKKAPAAGTKRKAPEKK 154


>02_04_0179 +
           20682852-20684510,20684593-20684661,20684741-20684809,
           20686779-20688206
          Length = 1074

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 446 EPAAQPEDSKTEXQATVAEISKEEXPSATDAEG 544
           EP A PE  + + Q    + +K+  PSA D +G
Sbjct: 132 EPPAPPEPKQQQQQQQAGDAAKQAAPSADDEDG 164


>09_04_0559 + 18516732-18516746,18516893-18517330
          Length = 150

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 365 KPXXKSRKQNHPEIPDAEAKSADIKVE-EPAA--QPEDSKTEXQATVAEISKEEXPSATD 535
           +P  +  K+  PE  + EA+ A  +V  EPAA  + E  + E  A VAE  KEE  +   
Sbjct: 68  EPAAEEVKEAEPEPAEPEAEPAKEEVAPEPAAAAEAEAKEAEPAAQVAEEVKEEEAAPAP 127

Query: 536 A 538
           A
Sbjct: 128 A 128


>12_01_0419 - 3316866-3318172,3318249-3318360
          Length = 472

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/54 (31%), Positives = 20/54 (37%)
 Frame = +2

Query: 380 SRKQNHPEIPDAEAKSADIKVEEPAAQPEDSKTEXQATVAEISKEEXPSATDAE 541
           S  +  PE P   A    + VEE  A  E+   E    V E      PS  D E
Sbjct: 202 SESEPEPEPPRDVAVETPVAVEEEVAVEEEVAVETPVAVEEPPPPPPPSVVDIE 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,908,157
Number of Sequences: 37544
Number of extensions: 180748
Number of successful extensions: 461
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)